RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 SLFN13Q68D06 897 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 LRRC47Q8N1G4 583 aaKnown RBP15□□□□□ -0.01
SCAF1-202ENST00000595242 BANK1Q8NDB2 785 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 GMCL1P1Q8NEA9 526 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 CAGE1Q8TC20 777 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 PRRX2Q99811 253 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 ANO2Q9NQ90 1003 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 CHMP5Q9NZZ3 219 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 ARPP21Q9UBL0 812 aaPredicted RBP15□□□□□ -0.01
SCAF1-202ENST00000595242 ISY1Q9ULR0 285 aaKnown RBP15□□□□□ -0.01
SCAF1-202ENST00000595242 DCHS1Q96JQ0 3298 aa15□□□□□ -0.01
SCAF1-202ENST00000595242 IGKV6D-41A0A0C4DH26 115 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 KPNA6O60684 536 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 CHGBP05060 677 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 SELPP16109 830 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 IKBKEQ14164 716 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 TCTN1Q2MV58 587 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 TIGD5Q53EQ6 642 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 NSMFQ6X4W1 530 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 LRRC8DQ7L1W4 858 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 CEP95Q96GE4 821 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.99□□□□□ -0.014e-7■■■□□ 16.7
SCAF1-202ENST00000595242 SLKQ9H2G2 1235 aaPredicted RBP14.99□□□□□ -0.01
SCAF1-202ENST00000595242 DIAPH3Q9NSV4 1193 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 INSL6Q9Y581 213 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 PLXNA3P51805 1871 aa14.99□□□□□ -0.01
SCAF1-202ENST00000595242 KIAA1217Q5T5P2 1943 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 RBM47A0AV96 593 aaKnown RBP14.98□□□□□ -0.01
SCAF1-202ENST00000595242 A6NJR5 290 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 NBNO60934 754 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 PARNO95453 639 aaKnown RBP14.98□□□□□ -0.01
SCAF1-202ENST00000595242 TTLL1O95922 423 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 CXCL10P02778 98 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 TCF15Q12870 199 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 IKQ13123 557 aaPredicted RBP14.98□□□□□ -0.01
SCAF1-202ENST00000595242 COL19A1Q14993 1142 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 TCEAL5Q5H9L2 206 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 BMP8AQ7Z5Y6 402 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 RNF135Q8IUD6 432 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 CHURC1Q8WUH1 139 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 EDAQ92838 391 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 KCNB2Q92953 911 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 PBXIP1Q96AQ6 731 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 CTAGE1Q96RT6 745 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 PAG1Q9NWQ8 432 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 CLDND1Q9NY35 253 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 MTMR4Q9NYA4 1195 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 SYNPO2Q9UMS6 1093 aa14.98□□□□□ -0.01
SCAF1-202ENST00000595242 RIF1Q5UIP0 2472 aaKnown RBP14.98□□□□□ -0.01
SCAF1-202ENST00000595242 MINDY4BA8MYZ0 360 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 EFCAB14O75071 495 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 MCM2P49736 904 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 SNAP25P60880 206 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 NBR1Q14596 966 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 EPC2Q52LR7 807 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 SBK1Q52WX2 424 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 FAM160B2Q86V87 743 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 ZNF444Q8N0Y2 327 aaPredicted RBP14.97□□□□□ -0.01
SCAF1-202ENST00000595242 STAG1Q8WVM7 1258 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 CHMP4CQ96CF2 233 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 POP1Q99575 1024 aaKnown RBP14.97□□□□□ -0.01
SCAF1-202ENST00000595242 HAUS7Q99871 368 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 ADD3Q9UEY8 706 aaKnown RBP14.97□□□□□ -0.01
SCAF1-202ENST00000595242 FAM186AA6NE01 2351 aa14.97□□□□□ -0.01
SCAF1-202ENST00000595242 RBAK-RBAKDNI3L0D1 243 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 CKBP12277 381 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 LTBRP36941 435 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 ALDH5A1P51649 535 aaPredicted RBP14.96□□□□□ -0.01
SCAF1-202ENST00000595242 PPP2R5BQ15173 497 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 UBE3CQ15386 1083 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 SMAD2Q15796 467 aaKnown RBP14.96□□□□□ -0.01
SCAF1-202ENST00000595242 PKN1Q16512 942 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 GDF6Q6KF10 455 aaPredicted RBP14.96□□□□□ -0.01
SCAF1-202ENST00000595242 PUS7LQ9H0K6 701 aaKnown RBP14.96□□□□□ -0.01
SCAF1-202ENST00000595242 BOLA2Q9H3K6 86 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 NSUN3Q9H649 340 aaKnown RBP14.96□□□□□ -0.01
SCAF1-202ENST00000595242 FAM86C1Q9NVL1 165 aa14.96□□□□□ -0.01
SCAF1-202ENST00000595242 VPS13AQ96RL7 3174 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 TMEM221A6NGB7 291 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 H3BNC9 293 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 M0R296 226 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 NKRFO15226 690 aaKnown RBP eCLIP14.95□□□□□ -0.02
SCAF1-202ENST00000595242 PRDM1O75626 825 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 SLC1A4P43007 532 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 GPM6BQ13491 265 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 BAATQ14032 418 aaPredicted RBP14.95□□□□□ -0.02
SCAF1-202ENST00000595242 CWC27Q6UX04 472 aaKnown RBP14.95□□□□□ -0.02
SCAF1-202ENST00000595242 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.95□□□□□ -0.02
SCAF1-202ENST00000595242 TRIM67Q6ZTA4 783 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 SUGP1Q8IWZ8 645 aaKnown RBP14.95□□□□□ -0.02
SCAF1-202ENST00000595242 DHX38Q92620 1227 aaKnown RBP14.95□□□□□ -0.02
SCAF1-202ENST00000595242 COPS5Q92905 334 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 CCPG1Q9ULG6 757 aa14.95□□□□□ -0.02
SCAF1-202ENST00000595242 CCDC171Q6TFL3 1326 aa14.94□□□□□ -0.02
SCAF1-202ENST00000595242 LOC102724159A0A0B4J2E5 919 aa14.94□□□□□ -0.02
SCAF1-202ENST00000595242 NCK2O43639 380 aa14.94□□□□□ -0.02
SCAF1-202ENST00000595242 HTRA4P83105 476 aaPredicted RBP14.94□□□□□ -0.02
SCAF1-202ENST00000595242 RBL2Q08999 1139 aa14.94□□□□□ -0.02
SCAF1-202ENST00000595242 NMIQ13287 307 aaPredicted RBP14.94□□□□□ -0.02
SCAF1-202ENST00000595242 PWP2Q15269 919 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms