RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PHF24Q9UPV7 400 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 FRMPD4Q14CM0 1322 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 EVI5O60447 810 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 DEXIO95424 95 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 FOSP01100 380 aaPredicted RBP17.24■□□□□ 0.35
UPF1-202ENST00000594243 GNA11P29992 359 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 ADCY7P51828 1080 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 ACLYP53396 1101 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 MCTP2Q6DN12 878 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 CCSAPQ6IQ19 270 aaPredicted RBP17.24■□□□□ 0.35
UPF1-202ENST00000594243 TYW1BQ6NUM6 668 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 ZMYND12Q9H0C1 365 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 C6orf50Q9HD87 102 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 PCDHA6Q9UN73 950 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 PCDHA8Q9Y5H6 950 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 MCM3APO60318 1980 aa17.24■□□□□ 0.35
UPF1-202ENST00000594243 ESYT2A0FGR8 921 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 PPFIA3O75145 1194 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 TGFB3P10600 412 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 FSCN1Q16658 493 aaKnown RBP17.23■□□□□ 0.35
UPF1-202ENST00000594243 UBE2SQ16763 222 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 ME3Q16798 604 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 GNPTABQ3T906 1256 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 BRDTQ58F21 947 aaPredicted RBP17.23■□□□□ 0.35
UPF1-202ENST00000594243 TMEM63BQ5T3F8 832 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 PRPF38BQ5VTL8 546 aaKnown RBP17.23■□□□□ 0.35
UPF1-202ENST00000594243 PCNX4Q63HM2 1172 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 CCDC62Q6P9F0 684 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 SLC39A5Q6ZMH5 540 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 CCDC148Q8NFR7 591 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 OR6J1Q8NGC5 347 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 FERMT2Q96AC1 680 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 KIF2CQ99661 725 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 SH3GLB2Q9NR46 395 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 NR2E3Q9Y5X4 410 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 MRVI1Q9Y6F6 885 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 LRRC37A2A6NM11 1700 aa17.23■□□□□ 0.35
UPF1-202ENST00000594243 MYADML2A6NDP7 307 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 CTAGE5O15320 804 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 ASGR1P07306 291 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 CPT1AP50416 773 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 LY6KQ17RY6 165 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 IL31RAQ8NI17 732 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 BICD2Q8TD16 824 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 GLT1D1Q96MS3 346 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 DDX41Q9UJV9 622 aaKnown RBP17.22■□□□□ 0.35
UPF1-202ENST00000594243 LIMCH1Q9UPQ0 1083 aa17.22■□□□□ 0.35
UPF1-202ENST00000594243 A0A1W2PQ45 241 aaPredicted RBP17.21■□□□□ 0.35
UPF1-202ENST00000594243 A0A1W2PQY0 241 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 ARIH2O95376 493 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 SLC34A2O95436 690 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 GH1P01241 217 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 CLK2P49760 499 aaKnown RBP17.21■□□□□ 0.35
UPF1-202ENST00000594243 ATN1P54259 1190 aaPredicted RBP17.21■□□□□ 0.35
UPF1-202ENST00000594243 IRX5P78411 483 aaPredicted RBP17.21■□□□□ 0.35
UPF1-202ENST00000594243 MRPS9P82933 396 aaKnown RBP17.21■□□□□ 0.35
UPF1-202ENST00000594243 BEX3Q00994 111 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 AP3B2Q13367 1082 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 RABEP1Q15276 862 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 LRRC26Q2I0M4 334 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 C1orf53Q5VUE5 145 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 NLRX1Q86UT6 975 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 FAM177A1Q8N128 213 aaPredicted RBP17.21■□□□□ 0.35
UPF1-202ENST00000594243 VTI1AQ96AJ9 217 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 STARD7Q9NQZ5 370 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 RTEL1Q9NZ71 1219 aa17.21■□□□□ 0.35
UPF1-202ENST00000594243 ELP1O95163 1332 aa17.21■□□□□ 0.34
UPF1-202ENST00000594243 KPNA6O60684 536 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 CABYRO75952 493 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 RGS20O76081 388 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 XBP1P17861 261 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 ICAM3P32942 547 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 NLRP5P59047 1200 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 LAMC2Q13753 1193 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 NECAB1Q8N987 351 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 COPS5Q92905 334 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 GTF3C6Q969F1 213 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 ZFP91Q96JP5 570 aaPredicted RBP17.2■□□□□ 0.34
UPF1-202ENST00000594243 ZSCAN31Q96LW9 406 aaPredicted RBP17.2■□□□□ 0.34
UPF1-202ENST00000594243 INPP4AQ96PE3 977 aaPredicted RBP17.2■□□□□ 0.34
UPF1-202ENST00000594243 BACH2Q9BYV9 841 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 POLR3EQ9NVU0 708 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 VPS54Q9P1Q0 977 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 STK36Q9NRP7 1315 aa17.2■□□□□ 0.34
UPF1-202ENST00000594243 A6NJR5 290 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 SPATA31C2B4DYI2 1134 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 MAFGO15525 162 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 FIBPO43427 364 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 ST18O60284 1047 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 PTGS1P23219 599 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 SNX17Q15036 470 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 DHX37Q8IY37 1157 aaKnown RBP17.19■□□□□ 0.34
UPF1-202ENST00000594243 REXO1Q8N1G1 1221 aaKnown RBP17.19■□□□□ 0.34
UPF1-202ENST00000594243 WASF1Q92558 559 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 CDHR1Q96JP9 859 aa17.19■□□□□ 0.34
UPF1-202ENST00000594243 LARGE1O95461 756 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 JAKMIP3Q5VZ66 844 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 GALNT17Q6IS24 598 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 C7orf61Q8IZ16 206 aa17.18■□□□□ 0.34
UPF1-202ENST00000594243 EMID1Q96A84 441 aaPredicted RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms