RNA–Protein interactions for RNA: ENST00000591383.1

VPS4B-205, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 701 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-205ENST00000591383 ETNK1Q9HBU6 452 aa7.45□□□□□ -1.22
VPS4B-205ENST00000591383 ZFYVE28Q9HCC9 887 aa7.45□□□□□ -1.22
VPS4B-205ENST00000591383 CWC22Q9HCG8 908 aaKnown RBP7.45□□□□□ -1.22
VPS4B-205ENST00000591383 ZCCHC17Q9NP64 241 aaKnown RBP7.45□□□□□ -1.22
VPS4B-205ENST00000591383 SAGE1Q9NXZ1 904 aa7.45□□□□□ -1.22
VPS4B-205ENST00000591383 CPA4Q9UI42 421 aa7.45□□□□□ -1.22
VPS4B-205ENST00000591383 SYNPO2Q9UMS6 1093 aa7.45□□□□□ -1.22
VPS4B-205ENST00000591383 SLC12A7Q9Y666 1083 aa7.45□□□□□ -1.22
VPS4B-205ENST00000591383 A0A1W2PRU2 124 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 RNF223E7ERA6 249 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 FOXN1O15353 648 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 ZBTB43O43298 467 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 PEX10O60683 326 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 P4HBP07237 508 aaKnown RBP7.44□□□□□ -1.22
VPS4B-205ENST00000591383 SLC16A2P36021 539 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 ZNF543Q08ER8 600 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 PLS1Q14651 629 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 GRM4Q14833 912 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 ARID5BQ14865 1188 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 PLA2G2CQ5R387 149 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 SYDE2Q5VT97 1194 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 CCDC174Q6PII3 467 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 APOA5Q6Q788 366 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 SYNE3Q6ZMZ3 975 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 RUFY3Q7L099 469 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 ANKRD13CQ8N6S4 541 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 JMYQ8N9B5 988 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 CTCFLQ8NI51 663 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-205ENST00000591383 MKL1Q969V6 931 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 TTC14Q96N46 770 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 TBC1D32Q96NH3 1257 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 CDK15Q96Q40 435 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 CPVLQ9H3G5 476 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 PDRG1Q9NUG6 133 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 FEM1BQ9UK73 627 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 PPP1R9AQ9ULJ8 1098 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 SLC45A1Q9Y2W3 748 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 ADGRA2Q96PE1 1338 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 CASP8AP2Q9UKL3 1982 aa7.44□□□□□ -1.22
VPS4B-205ENST00000591383 HSPA8P11142 646 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 TAL1P17542 331 aaPredicted RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 FSHRP23945 695 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 KIF5BP33176 963 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 GRM5P41594 1212 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 NOVP48745 357 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 METAP2P50579 478 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 NEK4P51957 841 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 SNAP25P60880 206 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 FOXK2Q01167 660 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 EXOSC10Q01780 885 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 DHX9Q08211 1270 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 STK3Q13188 491 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 RTN1Q16799 776 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 GPATCH4Q5T3I0 446 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 TTBK2Q6IQ55 1244 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 C16orf46Q6P387 395 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 CATSPERGQ6ZRH7 1159 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 FAM160B2Q86V87 743 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 HOMER1Q86YM7 354 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 CCAR1Q8IX12 1150 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 IGDCC4Q8TDY8 1250 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 PIBF1Q8WXW3 757 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 P2RX7Q99572 595 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 TM6SF1Q9BZW5 370 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 R3HDMLQ9H3Y0 253 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 HOMER2Q9NSB8 354 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 MYPNQ86TC9 1320 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 BAZ2BQ9UIF8 2168 aaKnown RBP7.43□□□□□ -1.22
VPS4B-205ENST00000591383 ZNF236Q9UL36 1845 aa7.43□□□□□ -1.22
VPS4B-205ENST00000591383 HTTP42858 3142 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 NDUFB5O43674 189 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 TLR2O60603 784 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 LILRA1O75019 489 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 ZBED4O75132 1171 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 PLEKHA8P1O95397 391 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CALM1P0DP23 149 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CALM2P0DP24 149 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CALM3P0DP25 149 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 SNHG28P0DPA3 235 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 HOXA7P31268 230 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-205ENST00000591383 LIFRP42702 1097 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 GCLCP48506 637 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CTCFP49711 727 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-205ENST00000591383 AK2P54819 239 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 ERVK-24P63145 666 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 TOB2Q14106 344 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-205ENST00000591383 COG2Q14746 738 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 RABEP1Q15276 862 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 FAM110CQ1W6H9 321 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 SNRNP48Q6IEG0 339 aaKnown RBP7.42□□□□□ -1.22
VPS4B-205ENST00000591383 SGMS1Q86VZ5 419 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CPXCR1Q8N123 301 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 STAG2Q8N3U4 1231 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 ANKLE1Q8NAG6 615 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 EHBP1Q8NDI1 1231 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CD99L2Q8TCZ2 262 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 CHURC1Q8WUH1 139 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 ANKS1AQ92625 1134 aa7.42□□□□□ -1.22
VPS4B-205ENST00000591383 MTA3Q9BTC8 594 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms