RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 MILR1Q7Z6M3 343 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 TRIM59Q8IWR1 403 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 LGI4Q8N135 537 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 FAM26EQ8N5C1 309 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 FAM169BQ8N8A8 192 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 SEC16BQ96JE7 1060 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 SYT3Q9BQG1 590 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 CYP26B1Q9NR63 512 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 INVSQ9Y283 1065 aa5.52□□□□□ -1.53
VPS4B-203ENST00000588323 TIMM13Q9Y5L4 95 aaPredicted RBP5.52□□□□□ -1.53
VPS4B-203ENST00000588323 MROH6A6NGR9 719 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 SLC6A11P48066 632 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 HDLBPQ00341 1268 aaKnown RBP5.51□□□□□ -1.53
VPS4B-203ENST00000588323 TBC1D10BQ4KMP7 808 aaPredicted RBP5.51□□□□□ -1.53
VPS4B-203ENST00000588323 MROH9Q5TGP6 573 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 C9orf131Q5VYM1 1079 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 CPZQ66K79 652 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 MCTP2Q6DN12 878 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 STK32CQ86UX6 486 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 FAM126BQ8IXS8 530 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 ANAPC16Q96DE5 110 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 SAMD11Q96NU1 681 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 YIPF4Q9BSR8 244 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 NKX2-4Q9H2Z4 354 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 NGRNQ9NPE2 291 aaKnown RBP5.51□□□□□ -1.53
VPS4B-203ENST00000588323 STRIP2Q9ULQ0 834 aa5.51□□□□□ -1.53
VPS4B-203ENST00000588323 ZNF536O15090 1300 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 FPR2P25090 351 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 ITGA1P56199 1179 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 RIOX2Q8IUF8 465 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 TTC9BQ8N6N2 239 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 TXNDC5Q8NBS9 432 aaKnown RBP5.5□□□□□ -1.53
VPS4B-203ENST00000588323 NPLOC4Q8TAT6 608 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 FRS2Q8WU20 508 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 TRMT2BQ96GJ1 504 aaKnown RBP5.5□□□□□ -1.53
VPS4B-203ENST00000588323 C8orf49Q96NF6 230 aa5.5□□□□□ -1.53
VPS4B-203ENST00000588323 DDX3XO00571 662 aaKnown RBP eCLIP5.49□□□□□ -1.53
VPS4B-203ENST00000588323 MYO1BO43795 1136 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 ZNF20P17024 532 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 STAT5AP42229 794 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 GTF2A2P52657 109 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 E4F1Q66K89 784 aaPredicted RBP5.49□□□□□ -1.53
VPS4B-203ENST00000588323 GLB1LQ6UWU2 654 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 CEP68Q76N32 757 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 CHST13Q8NET6 341 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 DIO2Q92813 273 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 LCORQ96JN0 433 aaPredicted RBP5.49□□□□□ -1.53
VPS4B-203ENST00000588323 MRGPRX3Q96LB0 322 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 LGR4Q9BXB1 951 aa5.49□□□□□ -1.53
VPS4B-203ENST00000588323 COA3Q9Y2R0 106 aaPredicted RBP5.49□□□□□ -1.53
VPS4B-203ENST00000588323 MEFVO15553 781 aaPredicted RBP5.48□□□□□ -1.53
VPS4B-203ENST00000588323 TNFRSF1AP19438 455 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 BCL6P41182 706 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 NKX3-2P78367 333 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 ZXDAP98168 799 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 KCNAB2Q13303 367 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 PRR31Q5SQ13 230 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 PRAMEF18Q5VWM3 479 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 BTN2A2Q8WVV5 523 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 TMEM169Q96HH4 297 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 LRP2BPQ9P2M1 347 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 INPP5FQ9Y2H2 1132 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 X6R8D5 127 aa5.48□□□□□ -1.53
VPS4B-203ENST00000588323 CYP1A1P04798 512 aaPredicted RBP5.47□□□□□ -1.53
VPS4B-203ENST00000588323 SNRPB2P08579 225 aaKnown RBP5.47□□□□□ -1.53
VPS4B-203ENST00000588323 HOXC12P31275 282 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 ECI1P42126 302 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 CYP4F3Q08477 520 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 CHRNA2Q15822 529 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 SV2CQ496J9 727 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 Q8N1Y9 231 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 C1QTNF3Q9BXJ4 246 aa5.47□□□□□ -1.53
VPS4B-203ENST00000588323 C9orf118A6NHY6 69 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 C1QTNF3-AMACRE9PGA6 284 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 MATN3O15232 486 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 ADAM9Q13443 819 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 SURF1Q15526 300 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 CR1LQ2VPA4 569 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 PLEKHH3Q7Z736 793 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 NLRP10Q86W26 655 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 CCDC103Q8IW40 242 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 TOE1Q96GM8 510 aaKnown RBP5.46□□□□□ -1.54
VPS4B-203ENST00000588323 CHAMP1Q96JM3 812 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 KRTAP3-1Q9BYR8 98 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 TGIF2Q9GZN2 237 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 ACBD3Q9H3P7 528 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 L2HGDHQ9H9P8 463 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 TMEFF2Q9UIK5 374 aaPredicted RBP5.46□□□□□ -1.54
VPS4B-203ENST00000588323 ZNF652Q9Y2D9 606 aa5.46□□□□□ -1.54
VPS4B-203ENST00000588323 HGSO14964 777 aaPredicted RBP5.45□□□□□ -1.54
VPS4B-203ENST00000588323 TBX1O43435 398 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 LAMTOR5O43504 91 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 CPP00450 1065 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 ITGAVP06756 1048 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 KCNJ6P48051 423 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 LARP1BQ659C4 914 aaKnown RBP5.45□□□□□ -1.54
VPS4B-203ENST00000588323 C6orf15Q6UXA7 325 aaPredicted RBP5.45□□□□□ -1.54
VPS4B-203ENST00000588323 LIMS2Q7Z4I7 341 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 ZNF227Q86WZ6 799 aa5.45□□□□□ -1.54
VPS4B-203ENST00000588323 DVL3Q92997 716 aaPredicted RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms