RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	RBM47	A0AV96	593 aa	Known RBP	18.77	■□□□□ 0.6
RARA-209	ENST00000579727	SMCO2	A6NFE2	343 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	hCG_1984214	I3L0E3	225 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	PIK3CD	O00329	1044 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	SORBS3	O60504	671 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	TXN	P10599	105 aa	Known RBP	18.77	■□□□□ 0.6
RARA-209	ENST00000579727	CCND2	P30279	289 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	ADCY7	P51828	1080 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	KCNA10	Q16322	511 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	LRRC26	Q2I0M4	334 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	DUSP28	Q4G0W2	176 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	PPP1R18	Q6NYC8	613 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	ZNF713	Q8N859	430 aa	Predicted RBP	18.77	■□□□□ 0.6
RARA-209	ENST00000579727	NECAB1	Q8N987	351 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	KLHDC9	Q8NEP7	349 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	SCFD2	Q8WU76	684 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	AP5M1	Q9H0R1	490 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	SPC25	Q9HBM1	224 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	TMEM260	Q9NX78	707 aa		18.77	■□□□□ 0.6
RARA-209	ENST00000579727	FRMPD4	Q14CM0	1322 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	DOCK5	Q9H7D0	1870 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	ADAMTS3	O15072	1205 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	CTAGE5	O15320	804 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	PFKFB2	O60825	505 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	EIF3J	O75822	258 aa	Known RBP	18.76	■□□□□ 0.59
RARA-209	ENST00000579727	RGS20	O76081	388 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	RBM25	P49756	843 aa	Known RBP	18.76	■□□□□ 0.59
RARA-209	ENST00000579727	ACLY	P53396	1101 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	SSRP1	Q08945	709 aa	Known RBP	18.76	■□□□□ 0.59
RARA-209	ENST00000579727	ME3	Q16798	604 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	LY6K	Q17RY6	165 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	GNAS	Q5JWF2	1037 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	C7orf61	Q8IZ16	206 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	OR6J1	Q8NGC5	347 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	RIC8A	Q9NPQ8	531 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	RTEL1	Q9NZ71	1219 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	VPS54	Q9P1Q0	977 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727	PHF24	Q9UPV7	400 aa		18.76	■□□□□ 0.59
RARA-209	ENST00000579727		A0A1W2PQ45	241 aa	Predicted RBP	18.75	■□□□□ 0.59
RARA-209	ENST00000579727		A0A1W2PQY0	241 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	SPDYE3	A6NKU9	549 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	EVI5	O60447	810 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	ASGR1	P07306	291 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	MRPS9	P82933	396 aa	Known RBP	18.75	■□□□□ 0.59
RARA-209	ENST00000579727	TTLL4	Q14679	1199 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	CCSAP	Q6IQ19	270 aa	Predicted RBP	18.75	■□□□□ 0.59
RARA-209	ENST00000579727	CPLX2	Q6PUV4	134 aa	Known RBP	18.75	■□□□□ 0.59
RARA-209	ENST00000579727	VSIG10L	Q86VR7	867 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	TRIM22	Q8IYM9	498 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	AIFM3	Q96NN9	605 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	UPF2	Q9HAU5	1272 aa	Known RBP	18.75	■□□□□ 0.59
RARA-209	ENST00000579727	PCDHA6	Q9UN73	950 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	PCDHA8	Q9Y5H6	950 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	NR2E3	Q9Y5X4	410 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	MRVI1	Q9Y6F6	885 aa		18.75	■□□□□ 0.59
RARA-209	ENST00000579727	MYH7B	A7E2Y1	1941 aa		18.74	■□□□□ 0.59
RARA-209	ENST00000579727		A0A1W2PPC1	479 aa		18.74	■□□□□ 0.59
RARA-209	ENST00000579727	CST5	P28325	142 aa	Predicted RBP	18.74	■□□□□ 0.59
RARA-209	ENST00000579727	FSCN1	Q16658	493 aa	Known RBP	18.74	■□□□□ 0.59
RARA-209	ENST00000579727	UNC80	Q8N2C7	3258 aa		18.74	■□□□□ 0.59
RARA-209	ENST00000579727	MOXD2P	A6NHM9	499 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	CTDNEP1	O95476	244 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	JAKMIP3	Q5VZ66	844 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	CCDC62	Q6P9F0	684 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	SLC39A5	Q6ZMH5	540 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	GTF3C6	Q969F1	213 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	ATP11B	Q9Y2G3	1177 aa		18.73	■□□□□ 0.59
RARA-209	ENST00000579727	DEXI	O95424	95 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	RTP1	P59025	263 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	ST3GAL1	Q11201	340 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	TRIM60	Q495X7	471 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	PCNX4	Q63HM2	1172 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	CXCL17	Q6UXB2	119 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	PCSK9	Q8NBP7	692 aa	Known RBP	18.72	■□□□□ 0.59
RARA-209	ENST00000579727	RASGRP4	Q8TDF6	673 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	TSEN34	Q9BSV6	310 aa	Known RBP	18.72	■□□□□ 0.59
RARA-209	ENST00000579727	ANO3	Q9BYT9	981 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	C6orf50	Q9HD87	102 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	STARD7	Q9NQZ5	370 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	DDX41	Q9UJV9	622 aa	Known RBP	18.72	■□□□□ 0.59
RARA-209	ENST00000579727		Q9Y3F1	56 aa		18.72	■□□□□ 0.59
RARA-209	ENST00000579727	NKRF	O15226	690 aa	Known RBP eCLIP	18.71	■□□□□ 0.59	3e-6	■■□□□ 12
RARA-209	ENST00000579727	CDKL5	O76039	1030 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	GH1	P01241	217 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	MYL3	P08590	195 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	SYN1	P17600	705 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	CLK2	P49760	499 aa	Known RBP	18.71	■□□□□ 0.59
RARA-209	ENST00000579727	ARHGAP1	Q07960	439 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	CCDC148	Q8NFR7	591 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	CCDC12	Q8WUD4	166 aa	Predicted RBP	18.71	■□□□□ 0.59
RARA-209	ENST00000579727	VTI1A	Q96AJ9	217 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	ZMYND12	Q9H0C1	365 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	18.71	■□□□□ 0.59
RARA-209	ENST00000579727	DNAH12	Q6ZR08	3092 aa		18.71	■□□□□ 0.59
RARA-209	ENST00000579727	ESYT2	A0FGR8	921 aa		18.7	■□□□□ 0.58
RARA-209	ENST00000579727	JAK2	O60674	1132 aa		18.7	■□□□□ 0.58
RARA-209	ENST00000579727	UBA1	P22314	1058 aa	Known RBP	18.7	■□□□□ 0.58
RARA-209	ENST00000579727	NLRP5	P59047	1200 aa		18.7	■□□□□ 0.58
RARA-209	ENST00000579727	PSMC6	P62333	389 aa		18.7	■□□□□ 0.58
RARA-209	ENST00000579727	NKX3-2	P78367	333 aa		18.7	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms