RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ARHGEF16Q5VV41 709 aa15.93■□□□□ 0.14
CCDC40-216ENST00000576241 STAG2Q8N3U4 1231 aa15.93■□□□□ 0.14
CCDC40-216ENST00000576241 TBC1D5Q92609 795 aa15.93■□□□□ 0.14
CCDC40-216ENST00000576241 COPS5Q92905 334 aa15.93■□□□□ 0.14
CCDC40-216ENST00000576241 TAAR1Q96RJ0 339 aa15.93■□□□□ 0.14
CCDC40-216ENST00000576241 YBX2Q9Y2T7 364 aaKnown RBP15.93■□□□□ 0.14
CCDC40-216ENST00000576241 UMODL1Q5DID0 1318 aa15.93■□□□□ 0.14
CCDC40-216ENST00000576241 IFIT3O14879 490 aaKnown RBP15.92■□□□□ 0.14
CCDC40-216ENST00000576241 TLL1O43897 1013 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 CFBP00751 764 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 FGBP02675 491 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 PTH1RQ03431 593 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 TRAF1Q13077 416 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 SEPT14Q6ZU15 432 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 RPUSD2Q8IZ73 545 aaKnown RBP15.92■□□□□ 0.14
CCDC40-216ENST00000576241 HERVK_113Q902F9 699 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 TRMT13Q9NUP7 481 aaKnown RBP15.92■□□□□ 0.14
CCDC40-216ENST00000576241 COL20A1Q9P218 1284 aa15.92■□□□□ 0.14
CCDC40-216ENST00000576241 ZBTB5O15062 677 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 ARIH2O95376 493 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 GH1P01241 217 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 EIF2AK2P19525 551 aaKnown RBP15.91■□□□□ 0.14
CCDC40-216ENST00000576241 NBPF20Q3BBV1 942 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 NFRKBQ6P4R8 1299 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 NCOA7Q8NI08 942 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 WNT8AQ9H1J5 351 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 MAD2L2Q9UI95 211 aa15.91■□□□□ 0.14
CCDC40-216ENST00000576241 PALM3A6NDB9 673 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-216ENST00000576241 E7EWF7 191 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 PI4K2BG5E9Z4 385 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 SGSM2O43147 1006 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 CYP2C9P11712 490 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 HSD17B4P51659 736 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 CHMP4BP1P59074 171 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 WTAPQ15007 396 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 CCDC62Q6P9F0 684 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 OTOP2Q7RTS6 562 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 HOMER1Q86YM7 354 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 PXMP2Q9NR77 195 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 MAP3K20Q9NYL2 800 aaKnown RBP15.9■□□□□ 0.14
CCDC40-216ENST00000576241 NOD1Q9Y239 953 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 PCDHA1Q9Y5I3 950 aa15.9■□□□□ 0.14
CCDC40-216ENST00000576241 EIF3JO75822 258 aaKnown RBP15.89■□□□□ 0.13
CCDC40-216ENST00000576241 NR3C2P08235 984 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 PFKMP08237 780 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 PTPN11Q06124 597 aaPredicted RBP15.89■□□□□ 0.13
CCDC40-216ENST00000576241 GRM4Q14833 912 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 LY6KQ17RY6 165 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 TMEM67Q5HYA8 995 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 CHST3Q7LGC8 479 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 CATIPQ7Z7H3 387 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 AFG1LQ8WV93 481 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 MTMR8Q96EF0 704 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 SCLYQ96I15 445 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 TRANK1O15050 2925 aa15.89■□□□□ 0.13
CCDC40-216ENST00000576241 CACNA1AO00555 2505 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 PRR33A8MZF0 331 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 OPLAHO14841 1288 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 PPP1R11O60927 126 aaPredicted RBP15.88■□□□□ 0.13
CCDC40-216ENST00000576241 MMP3P08254 477 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 NHLH1Q02575 133 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 GHRHRQ02643 423 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 ARHGAP1Q07960 439 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 SAMD3Q8N6K7 520 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 RETREG2Q8NC44 543 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 MAP4K1Q92918 833 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 CD320Q9NPF0 282 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 MRVI1Q9Y6F6 885 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 SLC4A7Q9Y6M7 1214 aa15.88■□□□□ 0.13
CCDC40-216ENST00000576241 ZBBXA8MT70 800 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 PITPNM1O00562 1244 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 CASTP20810 708 aaKnown RBP15.87■□□□□ 0.13
CCDC40-216ENST00000576241 RABGGTBP53611 331 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 BFSP2Q13515 415 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 DGKDQ16760 1214 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 PPP2R2DQ66LE6 453 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 CCDC155Q8N6L0 562 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 PPP1R13LQ8WUF5 828 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 PIGSQ96S52 555 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 PDCD2LQ9BRP1 358 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 RIOX1Q9H6W3 641 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 COG5Q9UP83 839 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 RBM8AQ9Y5S9 174 aaKnown RBP15.87■□□□□ 0.13
CCDC40-216ENST00000576241 MTCH2Q9Y6C9 303 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 TAF6LQ9Y6J9 622 aa15.87■□□□□ 0.13
CCDC40-216ENST00000576241 PNMA6FA0A0J9YX94 578 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 GCOM1H8Y6P7 765 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-216ENST00000576241 RFXAPO00287 272 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 POLR2MP0CAP2 368 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 MYCLP12524 364 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-216ENST00000576241 ACTN1P12814 892 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 MYOGP15173 224 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 HOXA13P31271 388 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-216ENST00000576241 RFC2P35250 354 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 TROAPQ12815 778 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 LAMC2Q13753 1193 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 KCNV1Q6PIU1 500 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 STOX1Q6ZVD7 989 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 DEFB128Q7Z7B8 93 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 DHX37Q8IY37 1157 aaKnown RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms