RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ECM1Q16610 540 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 FIGNQ5HY92 759 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 KIAA0825Q8IV33 1275 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 FLAD1Q8NFF5 587 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 DCAF4Q8WV16 495 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 DDX12PQ92771 950 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 NAP1L4Q99733 375 aaKnown RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 NAPGQ99747 312 aaPredicted RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 GLT8D2Q9H1C3 349 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 PI4KBQ9UBF8 816 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 FAM198AQ9UFP1 575 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 PCDHAC2Q9Y5I4 1007 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 A0A1W2PQJ5 194 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 NKRFO15226 690 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS53-220ENST00000576149 PNMA6AP0CW24 399 aaPredicted RBP11.23□□□□□ -0.61
VPS53-220ENST00000576149 KLK7P49862 253 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 CACNB3P54284 484 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 CHMP4BP1P59074 171 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 TCP10Q12799 353 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 PSMD2Q13200 908 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 QRICH1Q2TAL8 776 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 CERKLQ49MI3 558 aaPredicted RBP11.23□□□□□ -0.61
VPS53-220ENST00000576149 DACT2Q5SW24 774 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 UTP14CQ5TAP6 766 aaKnown RBP11.23□□□□□ -0.61
VPS53-220ENST00000576149 ZNF622Q969S3 477 aaKnown RBP eCLIP11.23□□□□□ -0.612e-7■■■■□ 24.6
VPS53-220ENST00000576149 PARD6BQ9BYG5 372 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 HAUS4Q9H6D7 363 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 KANSL2Q9H9L4 492 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 PCDHA12Q9UN75 941 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 ABCB11O95342 1321 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 FAM196BA6NMK8 535 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 SLC1A4P43007 532 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 HERVK_113P62684 666 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 LRRC63Q05C16 580 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 GABPB1Q06547 395 aaPredicted RBP11.23□□□□□ -0.61
VPS53-220ENST00000576149 HYIQ5T013 277 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 FKBP15Q5T1M5 1219 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 SLFN13Q68D06 897 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 TATDN1Q6P1N9 297 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 FOXR2Q6PJQ5 311 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 ZNF662Q6ZS27 426 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 SH3BP5LQ7L8J4 393 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 IQCDQ96DY2 449 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 PCDHA1Q9Y5I3 950 aa11.23□□□□□ -0.61
VPS53-220ENST00000576149 MYH4Q9Y623 1939 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 SIPA1L1O43166 1804 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L15C9J2P7 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L13C9JLJ4 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L11C9JVI0 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L18D6R9N7 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L22D6RA61 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L17D6RBQ6 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L19D6RCP7 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L20D6RJB6 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 ATP8B1O43520 1251 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 MARCH6O60337 910 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 FGFR1OPO95684 399 aaKnown RBP11.22□□□□□ -0.61
VPS53-220ENST00000576149 IDEP14735 1019 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP11P51784 963 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 KRT83P78385 493 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L24Q0WX57 530 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 SEPT2Q15019 361 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 SHROOM1Q2M3G4 852 aaPredicted RBP11.22□□□□□ -0.61
VPS53-220ENST00000576149 VWA3BQ502W6 1294 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 USP17L6PQ6QN14 398 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 SIAH1Q8IUQ4 282 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 CCDC170Q8IYT3 715 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 GJA10Q969M2 543 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 DNAJC19Q96DA6 116 aa11.22□□□□□ -0.61
VPS53-220ENST00000576149 ZNHIT6Q9NWK9 470 aaKnown RBP11.22□□□□□ -0.61
VPS53-220ENST00000576149 CYP3A7-CYP3A51PA0A087WV96 503 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 ECE2O60344 883 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 CYP3A7P24462 503 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 CYLC1P35663 651 aaPredicted RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 RBM5P52756 815 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS53-220ENST00000576149 TUBB4BP68371 445 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 CDK17Q00537 523 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 CDC37Q16543 378 aaPredicted RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 CC2D1AQ6P1N0 951 aaPredicted RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 PCMTD1Q96MG8 357 aaPredicted RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 NDST4Q9H3R1 872 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 ZSWIM4Q9H7M6 989 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 KCNMB3Q9NPA1 279 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 TRIM10Q9UDY6 481 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 PUF60Q9UHX1 559 aaKnown RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 GUCA1BQ9UMX6 200 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 KDM3AQ9Y4C1 1321 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 SEC31AO94979 1220 aaKnown RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 AMPD2Q01433 879 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 MAN2A1Q16706 1144 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 WHAMMP3Q1A5X7 153 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 TMEM179Q6ZVK1 233 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 C2CD5Q86YS7 1000 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 MBOAT7Q96N66 472 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 ANO3Q9BYT9 981 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 NT5C3AQ9H0P0 336 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 NHEJ1Q9H9Q4 299 aaPredicted RBP11.21□□□□□ -0.61
VPS53-220ENST00000576149 SERPINA10Q9UK55 444 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 SIK3Q9Y2K2 1263 aa11.21□□□□□ -0.61
VPS53-220ENST00000576149 EIF3CLB5ME19 914 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms