RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PPP4R2Q9NY27 417 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 MAD2L2Q9UI95 211 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 PHF24Q9UPV7 400 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 ATP11BQ9Y2G3 1177 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 TAF6LQ9Y6J9 622 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 MOXD2PA6NHM9 499 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 SH2B2O14492 632 aaPredicted RBP9.39□□□□□ -0.91
VPS53-214ENST00000572607 MAP3K7O43318 606 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 ZEB2O60315 1214 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 ADAMTS4O75173 837 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 REC8O95072 547 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 ANTXR2P58335 489 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 RTP1P59025 263 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 FGD1P98174 961 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 TROAPQ12815 778 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 IQSEC1Q6DN90 963 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 SLC39A5Q6ZMH5 540 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 ZNF654Q8IZM8 581 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 SPRYD3Q8NCJ5 442 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 IGDCC4Q8TDY8 1250 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 GLT1D1Q96MS3 346 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 NEK1Q96PY6 1258 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 MAP3K14Q99558 947 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 LY9Q9HBG7 655 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 STARD7Q9NQZ5 370 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 SEC63Q9UGP8 760 aaKnown RBP9.39□□□□□ -0.91
VPS53-214ENST00000572607 PCDHA1Q9Y5I3 950 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 SLC12A7Q9Y666 1083 aa9.39□□□□□ -0.91
VPS53-214ENST00000572607 A0A1W2PQ45 241 aaPredicted RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 A0A1W2PQY0 241 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 CFBP00751 764 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 HMGB1P09429 215 aaKnown RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 CST5P28325 142 aaPredicted RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 LIFRP42702 1097 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 ACLYP53396 1101 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 GJA9P57773 515 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 KCNA10Q16322 511 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 TSR1Q2NL82 804 aaKnown RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 BRDTQ58F21 947 aaPredicted RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 GNASQ5JWF2 1037 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 TLK2Q86UE8 772 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 KLHDC9Q8NEP7 349 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 MORC4Q8TE76 937 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 NSUN6Q8TEA1 469 aaKnown RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 VTI1AQ96AJ9 217 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 RRP36Q96EU6 259 aaKnown RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 PURBQ96QR8 312 aaKnown RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 PIGSQ96S52 555 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 LBHD1Q9BQE6 289 aaPredicted RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 KATNBL1Q9H079 304 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 UPF3AQ9H1J1 476 aaKnown RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 RIOX1Q9H6W3 641 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 SENP2Q9HC62 589 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 PRDM5Q9NQX1 630 aaPredicted RBP9.38□□□□□ -0.91
VPS53-214ENST00000572607 PLXNA1Q9UIW2 1896 aa9.38□□□□□ -0.91
VPS53-214ENST00000572607 ASTN1O14525 1302 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 PNMA6FA0A0J9YX94 578 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.37□□□□□ -0.91
VPS53-214ENST00000572607 SNX17Q15036 470 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 PPP2R5BQ15173 497 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 TRIM60Q495X7 471 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 C1orf53Q5VUE5 145 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 ARHGEF16Q5VV41 709 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 DHX32Q7L7V1 743 aaKnown RBP9.37□□□□□ -0.91
VPS53-214ENST00000572607 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS53-214ENST00000572607 SAMD3Q8N6K7 520 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 SYTL5Q8TDW5 730 aaPredicted RBP9.37□□□□□ -0.91
VPS53-214ENST00000572607 MTMR8Q96EF0 704 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 RMDN3Q96TC7 470 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 MYL10Q9BUA6 226 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 WDR11Q9BZH6 1224 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 MAP3K20Q9NYL2 800 aaKnown RBP9.37□□□□□ -0.91
VPS53-214ENST00000572607 Q9Y3F1 56 aa9.37□□□□□ -0.91
VPS53-214ENST00000572607 ARIH1Q9Y4X5 557 aaPredicted RBP9.37□□□□□ -0.91
VPS53-214ENST00000572607 ELP1O95163 1332 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 MROH7Q68CQ1 1323 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 A0A0U1RQG5 324 aaPredicted RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 MYADML2A6NDP7 307 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 DCDC2CA8MYV0 355 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 GCOM1H8Y6P7 765 aaPredicted RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 NKRFO15226 690 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS53-214ENST00000572607 TLR3O15455 904 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 DYNC1LI2O43237 492 aaPredicted RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 PQBP1O60828 265 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 CABYRO75952 493 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 ASGR1P07306 291 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 POLR2MP0CAP2 368 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 SMPD1P17405 629 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 EDNRBP24530 442 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 SMARCA1P28370 1054 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 CPT1AP50416 773 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 TTLL4Q14679 1199 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 STXBP2Q15833 593 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 FSCN1Q16658 493 aaKnown RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 TSGA10IPQ3SY00 556 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 DUSP28Q4G0W2 176 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 FAM109BQ6ICB4 259 aaPredicted RBP9.36□□□□□ -0.91
VPS53-214ENST00000572607 TAPT1Q6NXT6 567 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 MICU3Q86XE3 530 aa9.36□□□□□ -0.91
VPS53-214ENST00000572607 OR6J1Q8NGC5 347 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms