RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NFIBO00712 420 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 GH1P01241 217 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 GPNMBQ14956 572 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 DGKDQ16760 1214 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 ZNF618Q5T7W0 954 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS53-207ENST00000570510 TRIM67Q6ZTA4 783 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 SESTD1Q86VW0 696 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 TET1Q8NFU7 2136 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 ALG1Q9BT22 464 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 KATNAL1Q9BW62 490 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 IGFLR1Q9H665 355 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 TANC1Q9C0D5 1861 aa13.08□□□□□ -0.32
VPS53-207ENST00000570510 MYH4Q9Y623 1939 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 TSPY2A6NKD2 308 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 RAB11FIP3O75154 756 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 PTK7Q13308 1070 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 FBXO11Q86XK2 927 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 FBXL6Q8N531 539 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 DBF4BQ8NFT6 615 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 DNERQ8NFT8 737 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 DHX38Q92620 1227 aaKnown RBP13.07□□□□□ -0.32
VPS53-207ENST00000570510 HDAC6Q9UBN7 1215 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 GTF2IRD1Q9UHL9 959 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 PNMA2Q9UL42 364 aa13.07□□□□□ -0.32
VPS53-207ENST00000570510 MBTPS2O43462 519 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 CSPG5O95196 566 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 MMP3P08254 477 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 CTNNB1P35222 781 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 THPOP40225 353 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 HTRA4P83105 476 aaPredicted RBP13.06□□□□□ -0.32
VPS53-207ENST00000570510 RBL2Q08999 1139 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 TCF15Q12870 199 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 SMAD4Q13485 552 aaKnown RBP13.06□□□□□ -0.32
VPS53-207ENST00000570510 TCTN1Q2MV58 587 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 SLC30A10Q6XR72 485 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 SEPT14Q6ZU15 432 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 PPP2R3CQ969Q6 453 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 CD207Q9UJ71 328 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 SCN10AQ9Y5Y9 1956 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 USP34Q70CQ2 3546 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 SIP14410 1827 aa13.06□□□□□ -0.32
VPS53-207ENST00000570510 TRIP12Q14669 1992 aaPredicted RBP13.05□□□□□ -0.32
VPS53-207ENST00000570510 RSPH10B2B2RC85 870 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 GPAA1O43292 621 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 RSPH10BP0C881 870 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 SLC16A2P36021 539 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 PSEN2P49810 448 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 NDUFV1P49821 464 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
VPS53-207ENST00000570510 LY6KQ17RY6 165 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 KIAA0753Q2KHM9 967 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 FIBCD1Q8N539 461 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 SP7Q8TDD2 431 aaPredicted RBP13.05□□□□□ -0.32
VPS53-207ENST00000570510 SEPT8Q92599 483 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 APPBP2Q92624 585 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 CTAGE1Q96RT6 745 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 C11orf84Q9BUA3 381 aaPredicted RBP13.05□□□□□ -0.32
VPS53-207ENST00000570510 IFIH1Q9BYX4 1025 aaKnown RBP13.05□□□□□ -0.32
VPS53-207ENST00000570510 NAPBQ9H115 298 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 GREB1LQ9C091 1923 aaPredicted RBP13.05□□□□□ -0.32
VPS53-207ENST00000570510 ZNF318Q5VUA4 2279 aa13.05□□□□□ -0.32
VPS53-207ENST00000570510 PATL2C9JE40 543 aaKnown RBP13.04□□□□□ -0.32
VPS53-207ENST00000570510 LTBRP36941 435 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 RPS6P62753 249 aaKnown RBP13.04□□□□□ -0.32
VPS53-207ENST00000570510 ZXDAP98168 799 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 MFSD10Q14728 455 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 COL19A1Q14993 1142 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 SYDE2Q5VT97 1194 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 IFNL3Q8IZI9 196 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 DCAF4Q8WV16 495 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 TOP1MTQ969P6 601 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 OSBP2Q969R2 916 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 RANBP17Q9H2T7 1088 aaKnown RBP13.04□□□□□ -0.32
VPS53-207ENST00000570510 CHMP4BQ9H444 224 aaKnown RBP13.04□□□□□ -0.32
VPS53-207ENST00000570510 RWDD3Q9Y3V2 267 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 PLIN4Q96Q06 1357 aa13.04□□□□□ -0.32
VPS53-207ENST00000570510 RNF113AO15541 343 aaKnown RBP13.03□□□□□ -0.32
VPS53-207ENST00000570510 RANBP6O60518 1105 aaKnown RBP13.03□□□□□ -0.32
VPS53-207ENST00000570510 KDM4AO75164 1064 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 ARIH2O95376 493 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 RB1P06400 928 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 ZFYP08048 801 aaPredicted RBP13.03□□□□□ -0.32
VPS53-207ENST00000570510 RLBP1P12271 317 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 DLX2Q07687 328 aaPredicted RBP13.03□□□□□ -0.32
VPS53-207ENST00000570510 ERMP1Q7Z2K6 904 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 KAT2BQ92831 832 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 IL17RAQ96F46 866 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 LMAN2LQ9H0V9 348 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 EPB41L4AQ9HCS5 686 aaPredicted RBP13.03□□□□□ -0.32
VPS53-207ENST00000570510 GPCPD1Q9NPB8 672 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 ZDBF2Q9HCK1 2354 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 PTPRSQ13332 1948 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 CFAP54Q96N23 3096 aa13.03□□□□□ -0.32
VPS53-207ENST00000570510 ZFHX2Q9C0A1 2572 aaPredicted RBP13.02□□□□□ -0.32
VPS53-207ENST00000570510 H0Y858 1186 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 ZNF286BP0CG31 522 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 EDNRBP24530 442 aa13.02□□□□□ -0.33
VPS53-207ENST00000570510 ZNF200P98182 395 aaPredicted RBP13.02□□□□□ -0.33
VPS53-207ENST00000570510 PPARAQ07869 468 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms