RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 BICDL2A1A5D9 508 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 DDTLA6NHG4 134 aaPredicted RBP9.75□□□□□ -0.85
LINC00558-201ENST00000569422 E9PMD0 336 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 EDIL3O43854 480 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 SASH3O75995 380 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 IPO7O95373 1038 aaKnown RBP9.75□□□□□ -0.85
LINC00558-201ENST00000569422 SRGNP10124 158 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 HOXA10P31260 410 aaPredicted RBP9.75□□□□□ -0.85
LINC00558-201ENST00000569422 CRKP46108 304 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 GYS2P54840 703 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 GABPAQ06546 454 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 TRIM14Q14142 442 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 FKBP15Q5T1M5 1219 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 APOBEC3HQ6NTF7 200 aaKnown RBP9.75□□□□□ -0.85
LINC00558-201ENST00000569422 WDR59Q6PJI9 974 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 SRGAP1Q7Z6B7 1085 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 GPR161Q8N6U8 529 aaKnown RBP9.75□□□□□ -0.85
LINC00558-201ENST00000569422 ZNF507Q8TCN5 953 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 PSMB7Q99436 277 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 C7orf25Q9BPX7 421 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 ARFGAP3Q9NP61 516 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 PCDHA12Q9UN75 941 aa9.75□□□□□ -0.85
LINC00558-201ENST00000569422 KIAA1551Q9HCM1 1747 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 EEF2P13639 858 aaKnown RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 PLA2G4AP47712 749 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 SEPT2Q15019 361 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 RBM26Q5T8P6 1007 aaKnown RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 CC2D1AQ6P1N0 951 aaPredicted RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 SLC30A10Q6XR72 485 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 IFNLR1Q8IU57 520 aaPredicted RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 SMCR8Q8TEV9 937 aaPredicted RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 CUL5Q93034 780 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 MTMR9Q96QG7 549 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 GPBP1L1Q9HC44 474 aaPredicted RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 KIAA1024Q9UPX6 916 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 PCDHA1Q9Y5I3 950 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 SPATA31A6Q5VVP1 1343 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 FAM170AA1A519 330 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 MEIS1O00470 390 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 APBA3O96018 575 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 KRT18P05783 430 aaKnown RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 C2CD5Q86YS7 1000 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 ANKRD13CQ8N6S4 541 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 CRACR2AQ9BSW2 395 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 RAB34Q9BZG1 259 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 LACRTQ9GZZ8 138 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 DEF6Q9H4E7 631 aa9.74□□□□□ -0.85
LINC00558-201ENST00000569422 NHEJ1Q9H9Q4 299 aaPredicted RBP9.74□□□□□ -0.85
LINC00558-201ENST00000569422 RCCD1A6NED2 376 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 RASSF10A6NK89 507 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 EPHB6O15197 1021 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 DNA2P51530 1060 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 MRPL12P52815 198 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 QRICH1Q2TAL8 776 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CERKLQ49MI3 558 aaPredicted RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 RSRC2Q7L4I2 434 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 GDAP1L1Q96MZ0 367 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 PNKPQ96T60 521 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CUEDC2Q9H467 287 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 NLRC4Q9NPP4 1024 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CAPN11Q9UMQ6 739 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 POTEB3A0JP26 581 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CTAGE15A4D2H0 777 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 POTECB2RU33 542 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 TRAF5O00463 557 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 ZBTB5O15062 677 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 ZMYND10O75800 440 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 ATP1A1P05023 1023 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 MYL1P05976 194 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CTAGE8P0CG41 777 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CHRNA5P30532 468 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 HERVK_113P62684 666 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 ARID5AQ03989 594 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 POTEBQ6S5H4 581 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CTAGE6Q86UF2 777 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CTAGE4Q8IX94 777 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 NOA1Q8NC60 698 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 JAKMIP2Q96AA8 810 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CCDC42Q96M95 316 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 FGFBP2Q9BYJ0 223 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 TDRD3Q9H7E2 651 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 DNAJC18Q9H819 358 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 JADE2Q9NQC1 790 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 MYO6Q9UM54 1294 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 TBC1D8O95759 1140 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 MRPS25P82663 173 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 APBA1Q02410 837 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 PRR16Q569H4 304 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 MIIPQ5JXC2 388 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 SLC27A3Q5K4L6 730 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 SLFN13Q68D06 897 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 RRAGAQ7L523 313 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 FAM114A1Q8IWE2 563 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 CEP112Q8N8E3 955 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 RABGGTAQ92696 567 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 RAD54LQ92698 747 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 HAS1Q92839 578 aa9.73□□□□□ -0.85
LINC00558-201ENST00000569422 GTPBP4Q9BZE4 634 aaKnown RBP9.73□□□□□ -0.85
LINC00558-201ENST00000569422 RIC8AQ9NPQ8 531 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms