RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 MYL3P08590 195 aa23.43■■□□□ 1.34
CLK3-225ENST00000569063 MYCLP12524 364 aaPredicted RBP23.43■■□□□ 1.34
CLK3-225ENST00000569063 ARHGAP1Q07960 439 aa23.43■■□□□ 1.34
CLK3-225ENST00000569063 GPR153Q6NV75 609 aa23.43■■□□□ 1.34
CLK3-225ENST00000569063 RBM28Q9NW13 759 aaKnown RBP23.43■■□□□ 1.34
CLK3-225ENST00000569063 SNX14Q9Y5W7 946 aa23.43■■□□□ 1.34
CLK3-225ENST00000569063 KIAA1217Q5T5P2 1943 aa23.43■■□□□ 1.34
CLK3-225ENST00000569063 FRMPD4Q14CM0 1322 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 PIK3CDO00329 1044 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 RGS20O76081 388 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 KCNV1Q6PIU1 500 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 IL31RAQ8NI17 732 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 EMID1Q96A84 441 aaPredicted RBP23.42■■□□□ 1.34
CLK3-225ENST00000569063 MRVI1Q9Y6F6 885 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 SZT2Q5T011 3432 aa23.42■■□□□ 1.34
CLK3-225ENST00000569063 ZBTB43O43298 467 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 CENPBP07199 599 aaPredicted RBP23.41■■□□□ 1.34
CLK3-225ENST00000569063 CCND2P30279 289 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 FPGSQ05932 587 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 SHHQ15465 462 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 MFSD5Q6N075 450 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 CCDC82Q8N4S0 544 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 AFG1LQ8WV93 481 aa23.41■■□□□ 1.34
CLK3-225ENST00000569063 JAKMIP1Q96N16 626 aaKnown RBP23.41■■□□□ 1.34
CLK3-225ENST00000569063 MEIS2O14770 477 aa23.4■■□□□ 1.34
CLK3-225ENST00000569063 B4GALT4O60513 344 aa23.4■■□□□ 1.34
CLK3-225ENST00000569063 RCAN1P53805 252 aa23.4■■□□□ 1.34
CLK3-225ENST00000569063 C9orf50Q5SZB4 431 aa23.4■■□□□ 1.34
CLK3-225ENST00000569063 CUL5Q93034 780 aa23.4■■□□□ 1.34
CLK3-225ENST00000569063 TRPV6Q9H1D0 765 aa23.4■■□□□ 1.34
CLK3-225ENST00000569063 ALDH8A1Q9H2A2 487 aaPredicted RBP23.4■■□□□ 1.34
CLK3-225ENST00000569063 KLF18A0A0U1RQI7 1052 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 STAM2O75886 525 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 MMP3P08254 477 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 TGFB3P10600 412 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 CPA1P15085 419 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 EPHB4P54760 987 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 LAMC2Q13753 1193 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 RTN1Q16799 776 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 NFRKBQ6P4R8 1299 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 USP17L6PQ6QN14 398 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 FBXL16Q8N461 479 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 SMARCC2Q8TAQ2 1214 aa23.39■■□□□ 1.33
CLK3-225ENST00000569063 hCG_1642624A0A1W2PR95 340 aa23.38■■□□□ 1.33
CLK3-225ENST00000569063 FGD1P98174 961 aa23.38■■□□□ 1.33
CLK3-225ENST00000569063 FUT2Q10981 343 aa23.38■■□□□ 1.33
CLK3-225ENST00000569063 NBPF20Q3BBV1 942 aa23.38■■□□□ 1.33
CLK3-225ENST00000569063 BLOC1S2Q6QNY1 142 aa23.38■■□□□ 1.33
CLK3-225ENST00000569063 PSTPIP2Q9H939 334 aa23.38■■□□□ 1.33
CLK3-225ENST00000569063 CNTNAP5Q8WYK1 1306 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 SUPT20HL2P0C7V6 817 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 MRPS9P82933 396 aaKnown RBP23.37■■□□□ 1.33
CLK3-225ENST00000569063 DGKDQ16760 1214 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 Q6ZUG5 572 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 DHX37Q8IY37 1157 aaKnown RBP23.37■■□□□ 1.33
CLK3-225ENST00000569063 TMEM199Q8N511 208 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 PPTC7Q8NI37 304 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 HIPK3Q9H422 1215 aa23.37■■□□□ 1.33
CLK3-225ENST00000569063 FAM217BQ9NTX9 383 aaPredicted RBP23.37■■□□□ 1.33
CLK3-225ENST00000569063 SCN10AQ9Y5Y9 1956 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 GOLGA8AA7E2F4 631 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 GOLGA8BA8MQT2 603 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 CASTP20810 708 aaKnown RBP23.36■■□□□ 1.33
CLK3-225ENST00000569063 RPS6KB1P23443 525 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 PSMA5P28066 241 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 PTPN11Q06124 597 aaPredicted RBP23.36■■□□□ 1.33
CLK3-225ENST00000569063 CELF3Q5SZQ8 465 aaKnown RBP23.36■■□□□ 1.33
CLK3-225ENST00000569063 MYSM1Q5VVJ2 828 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 PCNX4Q63HM2 1172 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 XRRA1Q6P2D8 792 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 INPP4AQ96PE3 977 aaPredicted RBP23.36■■□□□ 1.33
CLK3-225ENST00000569063 AGXT2Q9BYV1 514 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 PPP1R12CQ9BZL4 782 aa23.36■■□□□ 1.33
CLK3-225ENST00000569063 ICAM3P32942 547 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 CYP2C18P33260 490 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 SP2Q02086 613 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 PPIGQ13427 754 aaKnown RBP eCLIP23.35■■□□□ 1.332e-7■■■□□ 16.6
CLK3-225ENST00000569063 GNPTABQ3T906 1256 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 HEATR3Q7Z4Q2 680 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 KAT2BQ92831 832 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 ZFP91Q96JP5 570 aaPredicted RBP23.35■■□□□ 1.33
CLK3-225ENST00000569063 NOC4LQ9BVI4 516 aaKnown RBP23.35■■□□□ 1.33
CLK3-225ENST00000569063 USP26Q9BXU7 913 aa23.35■■□□□ 1.33
CLK3-225ENST00000569063 TRMT13Q9NUP7 481 aaKnown RBP23.35■■□□□ 1.33
CLK3-225ENST00000569063 HOXD8P13378 290 aaPredicted RBP23.34■■□□□ 1.33
CLK3-225ENST00000569063 CSF2RAP15509 400 aa23.34■■□□□ 1.33
CLK3-225ENST00000569063 CDC27P30260 824 aa23.34■■□□□ 1.33
CLK3-225ENST00000569063 APOBRQ0VD83 1088 aa23.34■■□□□ 1.33
CLK3-225ENST00000569063 TEX2Q8IWB9 1127 aa23.34■■□□□ 1.33
CLK3-225ENST00000569063 GPKOWQ92917 476 aaPredicted RBP eCLIP23.34■■□□□ 1.33
CLK3-225ENST00000569063 BRF1Q92994 677 aa23.34■■□□□ 1.33
CLK3-225ENST00000569063 V9GY48 417 aaPredicted RBP23.34■■□□□ 1.33
CLK3-225ENST00000569063 CCDC196A0A1B0GTZ2 297 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 SPATA31C2B4DYI2 1134 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 PPFIA4O75335 1185 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 GGPS1O95749 300 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 UBA1P22314 1058 aaKnown RBP23.33■■□□□ 1.33
CLK3-225ENST00000569063 METAP2P50579 478 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLK3-225ENST00000569063 FAM47CQ5HY64 1035 aa23.33■■□□□ 1.33
CLK3-225ENST00000569063 WWC2Q6AWC2 1192 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms