RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 XPNPEP3Q9NQH7 507 aa25.13■■□□□ 1.61
CLN3-234ENST00000568472 DDX49Q9Y6V7 483 aaKnown RBP25.13■■□□□ 1.61
CLN3-234ENST00000568472 LCTP09848 1927 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 ADCYAP1R1P41586 468 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 DUSP28Q4G0W2 176 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 BLIDQ8IZY5 108 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 AIFM3Q96NN9 605 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 ANO3Q9BYT9 981 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 PDGFCQ9NRA1 345 aa25.12■■□□□ 1.61
CLN3-234ENST00000568472 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.12■■□□□ 1.61
CLN3-234ENST00000568472 SREBF1P36956 1147 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 JAKMIP3Q5VZ66 844 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 RNF180Q86T96 592 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 FAM184AQ8NB25 1140 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 IL31RAQ8NI17 732 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 SNX21Q969T3 373 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 SHISA4Q96DD7 197 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 BRMS1Q9HCU9 246 aa25.11■■□□□ 1.61
CLN3-234ENST00000568472 NKX3-2P78367 333 aa25.1■■□□□ 1.61
CLN3-234ENST00000568472 MRPS9P82933 396 aaKnown RBP25.1■■□□□ 1.61
CLN3-234ENST00000568472 SEPT14Q6ZU15 432 aa25.1■■□□□ 1.61
CLN3-234ENST00000568472 NLRX1Q86UT6 975 aa25.1■■□□□ 1.61
CLN3-234ENST00000568472 CDHR1Q96JP9 859 aa25.1■■□□□ 1.61
CLN3-234ENST00000568472 INPP4AQ96PE3 977 aaPredicted RBP25.1■■□□□ 1.61
CLN3-234ENST00000568472 AP5M1Q9H0R1 490 aa25.1■■□□□ 1.61
CLN3-234ENST00000568472 GNEQ9Y223 722 aaKnown RBP25.1■■□□□ 1.61
CLN3-234ENST00000568472 MAFGO15525 162 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 TXNP10599 105 aaKnown RBP25.09■■□□□ 1.61
CLN3-234ENST00000568472 SMPD1P17405 629 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 GJA9P57773 515 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 ANO1Q5XXA6 986 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 CCDC62Q6P9F0 684 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 UPF3AQ9H1J1 476 aaKnown RBP25.09■■□□□ 1.61
CLN3-234ENST00000568472 TMEM260Q9NX78 707 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 MRVI1Q9Y6F6 885 aa25.09■■□□□ 1.61
CLN3-234ENST00000568472 C11orf97A0A1B0GVM6 126 aaPredicted RBP25.08■■□□□ 1.61
CLN3-234ENST00000568472 DNM1LO00429 736 aa25.08■■□□□ 1.61
CLN3-234ENST00000568472 CYP3A4P08684 503 aa25.08■■□□□ 1.61
CLN3-234ENST00000568472 ICAM3P32942 547 aa25.08■■□□□ 1.61
CLN3-234ENST00000568472 KCNJ14Q9UNX9 436 aa25.08■■□□□ 1.61
CLN3-234ENST00000568472 KBTBD13C9JR72 458 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 M0R2N6 131 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 FIBPO43427 364 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 RGS20O76081 388 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 RGS19P49795 217 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 ARHGAP4P98171 946 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 CUL4AQ13619 759 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 NPY5RQ15761 445 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 KRT25Q7Z3Z0 450 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 TLK2Q86UE8 772 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 GPRASP2Q96D09 838 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 C8orf76Q96K31 380 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 TSEN34Q9BSV6 310 aaKnown RBP25.07■■□□□ 1.6
CLN3-234ENST00000568472 DDX41Q9UJV9 622 aaKnown RBP25.07■■□□□ 1.6
CLN3-234ENST00000568472 UBIAD1Q9Y5Z9 338 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 SYNRGQ9UMZ2 1314 aa25.07■■□□□ 1.6
CLN3-234ENST00000568472 SPATA31C2B4DYI2 1134 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 ADCY6O43306 1168 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 ADAMTS4O75173 837 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 FARP2O94887 1054 aaPredicted RBP25.06■■□□□ 1.6
CLN3-234ENST00000568472 CST5P28325 142 aaPredicted RBP25.06■■□□□ 1.6
CLN3-234ENST00000568472 USP11P51784 963 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 LRRC41Q15345 812 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 SAFBQ15424 915 aaKnown RBP eCLIP25.06■■□□□ 1.6
CLN3-234ENST00000568472 BRDTQ58F21 947 aaPredicted RBP25.06■■□□□ 1.6
CLN3-234ENST00000568472 PCSK9Q8NBP7 692 aaKnown RBP25.06■■□□□ 1.6
CLN3-234ENST00000568472 CRYGNQ8WXF5 182 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 RTEL1Q9NZ71 1219 aa25.06■■□□□ 1.6
CLN3-234ENST00000568472 K7ELQ4 463 aaPredicted RBP25.05■■□□□ 1.6
CLN3-234ENST00000568472 DYNC1LI2O43237 492 aaPredicted RBP25.05■■□□□ 1.6
CLN3-234ENST00000568472 DTNBO60941 627 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 CAPN15O75808 1086 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 PGK1P00558 417 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 MMP1P03956 469 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 KRT2P35908 639 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 ZNF76P36508 570 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 CEP55Q53EZ4 464 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 NIPA1Q7RTP0 329 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 NECAB2Q7Z6G3 386 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 GIMAP8Q8ND71 665 aaPredicted RBP25.05■■□□□ 1.6
CLN3-234ENST00000568472 KLHDC9Q8NEP7 349 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 PGBD1Q96JS3 809 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 SENP7Q9BQF6 1050 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 MXRA8Q9BRK3 442 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 JADE2Q9NQC1 790 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 SMC3Q9UQE7 1217 aa25.05■■□□□ 1.6
CLN3-234ENST00000568472 MCM3APO60318 1980 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 ZEB2O60315 1214 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 GH1P01241 217 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 C6orf222P0C671 652 aaPredicted RBP25.04■■□□□ 1.6
CLN3-234ENST00000568472 CPT1AP50416 773 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 LAMC2Q13753 1193 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 NEDD9Q14511 834 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 GNASQ5JWF2 1037 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 IFFO2Q5TF58 517 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 KRT40Q6A162 431 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 UBE2Q1Q7Z7E8 422 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 FBXO18Q8NFZ0 1043 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 RASGRP4Q8TDF6 673 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 EMID1Q96A84 441 aaPredicted RBP25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms