RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 MYL3P08590 195 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 GPR153Q6NV75 609 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 FBXL16Q8N461 479 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 SMARCC2Q8TAQ2 1214 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 EMID1Q96A84 441 aaPredicted RBP21.57■■□□□ 1.04
CLN3-227ENST00000567495 TCEANC2Q96MN5 208 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 PSTPIP2Q9H939 334 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 DDX41Q9UJV9 622 aaKnown RBP21.57■■□□□ 1.04
CLN3-227ENST00000567495 BRPF3Q9ULD4 1205 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 MRVI1Q9Y6F6 885 aa21.57■■□□□ 1.04
CLN3-227ENST00000567495 CD4P01730 458 aa21.56■■□□□ 1.04
CLN3-227ENST00000567495 MYCLP12524 364 aaPredicted RBP21.56■■□□□ 1.04
CLN3-227ENST00000567495 LAMC2Q13753 1193 aa21.56■■□□□ 1.04
CLN3-227ENST00000567495 XRRA1Q6P2D8 792 aa21.56■■□□□ 1.04
CLN3-227ENST00000567495 RAB11FIP4Q86YS3 637 aa21.56■■□□□ 1.04
CLN3-227ENST00000567495 CMTR1Q8N1G2 835 aaKnown RBP21.56■■□□□ 1.04
CLN3-227ENST00000567495 COPS5Q92905 334 aa21.56■■□□□ 1.04
CLN3-227ENST00000567495 BAZ2BQ9UIF8 2168 aaKnown RBP21.55■■□□□ 1.04
CLN3-227ENST00000567495 GRIN2DO15399 1336 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 FRMPD4Q14CM0 1322 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 KLF18A0A0U1RQI7 1052 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 SUPT20HL2P0C7V6 817 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 ARHGAP1Q07960 439 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 LY6KQ17RY6 165 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 GNPTABQ3T906 1256 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 CCDC82Q8N4S0 544 aa21.55■■□□□ 1.04
CLN3-227ENST00000567495 GOLGA8AA7E2F4 631 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 GOLGA8BA8MQT2 603 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 RPS6KB1P23443 525 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 ITGB8P26012 769 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 PSMC6P62333 389 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 FPGSQ05932 587 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 AFG1LQ8WV93 481 aa21.54■■□□□ 1.04
CLN3-227ENST00000567495 hCG_1984214I3L0E3 225 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 MEIS2O14770 477 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 EIF5BO60841 1220 aaKnown RBP21.53■■□□□ 1.04
CLN3-227ENST00000567495 RGS20O76081 388 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 CASTP20810 708 aaKnown RBP21.53■■□□□ 1.04
CLN3-227ENST00000567495 PTPN11Q06124 597 aaPredicted RBP21.53■■□□□ 1.04
CLN3-227ENST00000567495 DGKDQ16760 1214 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 MFSD5Q6N075 450 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 NFRKBQ6P4R8 1299 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 USP17L6PQ6QN14 398 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 Q6ZUG5 572 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 HEATR3Q7Z4Q2 680 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 DHX37Q8IY37 1157 aaKnown RBP21.53■■□□□ 1.04
CLN3-227ENST00000567495 ZNF713Q8N859 430 aaPredicted RBP21.53■■□□□ 1.04
CLN3-227ENST00000567495 IL31RAQ8NI17 732 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 PPTC7Q8NI37 304 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 ALDH8A1Q9H2A2 487 aaPredicted RBP21.53■■□□□ 1.04
CLN3-227ENST00000567495 MYH6P13533 1939 aa21.53■■□□□ 1.04
CLN3-227ENST00000567495 MMP3P08254 477 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 FUT2Q10981 343 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 PPIGQ13427 754 aaKnown RBP eCLIP21.52■■□□□ 1.045e-7■■□□□ 12.5
CLN3-227ENST00000567495 PPP1R18Q6NYC8 613 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 TMEM199Q8N511 208 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 USP26Q9BXU7 913 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 AGXT2Q9BYV1 514 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 GLT8D2Q9H1C3 349 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 PCDH10Q9P2E7 1040 aa21.52■■□□□ 1.04
CLN3-227ENST00000567495 NAP1L2Q9ULW6 460 aaPredicted RBP21.52■■□□□ 1.04
CLN3-227ENST00000567495 V9GY48 417 aaPredicted RBP21.52■■□□□ 1.04
CLN3-227ENST00000567495 SOX1O00570 391 aaPredicted RBP21.51■■□□□ 1.03
CLN3-227ENST00000567495 PPFIA4O75335 1185 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 ICAM3P32942 547 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 METAP2P50579 478 aaKnown RBP eCLIP21.51■■□□□ 1.03
CLN3-227ENST00000567495 NBPF20Q3BBV1 942 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 CELF3Q5SZQ8 465 aaKnown RBP21.51■■□□□ 1.03
CLN3-227ENST00000567495 PCNX4Q63HM2 1172 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 BRF1Q92994 677 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 INPP4AQ96PE3 977 aaPredicted RBP21.51■■□□□ 1.03
CLN3-227ENST00000567495 TRPV6Q9H1D0 765 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 HIPK3Q9H422 1215 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 CNTNAP5Q8WYK1 1306 aa21.51■■□□□ 1.03
CLN3-227ENST00000567495 LAMA3Q16787 3333 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 hCG_1642624A0A1W2PR95 340 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 SPDYE3A6NKU9 549 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 B4GALT4O60513 344 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 SHHQ15465 462 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 MYSM1Q5VVJ2 828 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 KATNAL1Q9BW62 490 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 TM6SF1Q9BZW5 370 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 EHMT1Q9H9B1 1298 aa21.5■■□□□ 1.03
CLN3-227ENST00000567495 FAM217BQ9NTX9 383 aaPredicted RBP21.5■■□□□ 1.03
CLN3-227ENST00000567495 FIBPO43427 364 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 HOXD8P13378 290 aaPredicted RBP21.49■■□□□ 1.03
CLN3-227ENST00000567495 CPA1P15085 419 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 EVCP57679 992 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 MRPS9P82933 396 aaKnown RBP21.49■■□□□ 1.03
CLN3-227ENST00000567495 APOBRQ0VD83 1088 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 NEDD9Q14511 834 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 FAM47CQ5HY64 1035 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 RUFY3Q7L099 469 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 LRCH3Q96II8 777 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 SPATA33Q96N06 139 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 MLXIPQ9HAP2 919 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 ZSWIM6Q9HCJ5 1215 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 CYP46A1Q9Y6A2 500 aa21.49■■□□□ 1.03
CLN3-227ENST00000567495 SPATA31C2B4DYI2 1134 aa21.48■■□□□ 1.03
CLN3-227ENST00000567495 GGPS1O95749 300 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms