RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 MTG1Q9BT17 334 aaPredicted RBP13.2□□□□□ -0.3
HDGFL3-204ENST00000563790 PLVAPQ9BX97 442 aa13.2□□□□□ -0.3
HDGFL3-204ENST00000563790 GPR108Q9NPR9 543 aa13.2□□□□□ -0.3
HDGFL3-204ENST00000563790 LIMD1Q9UGP4 676 aa13.2□□□□□ -0.3
HDGFL3-204ENST00000563790 DUSP12Q9UNI6 340 aa13.2□□□□□ -0.3
HDGFL3-204ENST00000563790 PCNX2A6NKB5 2137 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 URB1O60287 2271 aaKnown RBP13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 POTEMA6NI47 508 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 STK25O00506 426 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 MAP3K13O43283 966 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 NTRK1P04629 796 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 CCDC6Q16204 474 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 SPECC1Q5M775 1068 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 POTEGQ6S5H5 508 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 PRR23CQ6ZRP0 262 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 DNAAF4Q8WXU2 420 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 P2RX5Q93086 422 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 ABCF2Q9UG63 623 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 FBXO4Q9UKT5 387 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 RAI2Q9Y5P3 530 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 ATMQ13315 3056 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 LCTP09848 1927 aa13.19□□□□□ -0.3
HDGFL3-204ENST00000563790 UPP2O95045 317 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 DCNP07585 359 aaKnown RBP13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 CKBP12277 381 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 LIMK1P53667 647 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 PTGISQ16647 500 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 KIAA1755Q5JYT7 1200 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 SYCE2Q6PIF2 218 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 C19orf48Q6RUI8 117 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 TMEM184AQ6ZMB5 413 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 G2E3Q7L622 706 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 PPP1R13LQ8WUF5 828 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 DHX38Q92620 1227 aaKnown RBP13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 LSM14BQ9BX40 385 aaKnown RBP13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 POMKQ9H5K3 350 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 TLE6Q9H808 572 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 PALD1Q9ULE6 856 aa13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 MYO5AQ9Y4I1 1855 aaKnown RBP13.18□□□□□ -0.3
HDGFL3-204ENST00000563790 PDS5AQ29RF7 1337 aaKnown RBP13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 A0A1W2PRG0 241 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 MBTPS1Q14703 1052 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 ABCB5Q2M3G0 1257 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 ANKRD54Q6NXT1 300 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 ATF7IPQ6VMQ6 1270 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.17□□□□□ -0.31e-6■□□□□ 9.8
HDGFL3-204ENST00000563790 PLCD3Q8N3E9 789 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 FAM133AQ8N9E0 248 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 SPPL3Q8TCT6 385 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 IL17RAQ96F46 866 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 NECTIN4Q96NY8 510 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 SEMA4GQ9NTN9 838 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 TRIM35Q9UPQ4 493 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 FBN3Q75N90 2809 aa13.17□□□□□ -0.3
HDGFL3-204ENST00000563790 SETD2Q9BYW2 2564 aaPredicted RBP13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 KRBA1A5PL33 1030 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 RBAK-RBAKDNI3L0D1 243 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 KCNK5O95279 499 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 LDHCP07864 332 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 SPINK2P20155 84 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 RFX1P22670 979 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 GUCY1A2P33402 732 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 PLCD1P51178 756 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 TDGQ13569 410 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 COL28A1Q2UY09 1125 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 TMEM63BQ5T3F8 832 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 IQSEC1Q6DN90 963 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 TRAF7Q6Q0C0 670 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 PIP4P2Q8N4L2 257 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 TDRD5Q8NAT2 981 aaKnown RBP13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 REPS2Q8NFH8 660 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 SH3RF3Q8TEJ3 882 aaPredicted RBP13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 NELL1Q92832 810 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 CDCA3Q99618 268 aaPredicted RBP13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 TBC1D17Q9HA65 648 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 ZSCAN32Q9NX65 697 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 WNT16Q9UBV4 365 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 C2orf16Q68DN1 1984 aa13.16□□□□□ -0.3
HDGFL3-204ENST00000563790 FLT1P17948 1338 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 POLQO75417 2590 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 VWA5AO00534 786 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 FOXD2O60548 495 aaPredicted RBP13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 C1QL1O75973 258 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 MYL3P08590 195 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 NCLP19338 710 aaKnown RBP13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 KCNC3Q14003 757 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 CSRP2Q16527 193 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 C8orf58Q8NAV2 365 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 DBF4BQ8NFT6 615 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 IFIH1Q9BYX4 1025 aaKnown RBP13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 GPHNQ9NQX3 736 aaPredicted RBP13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 SIT1Q9Y3P8 196 aa13.15□□□□□ -0.3
HDGFL3-204ENST00000563790 EMSYQ7Z589 1322 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 NBPF19A0A087WUL8 3843 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 HAX1O00165 279 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 GRM8O00222 908 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 ITGB1P05556 798 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 HLA-DOAP06340 250 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 ZNF853P0CG23 659 aa13.14□□□□□ -0.31
HDGFL3-204ENST00000563790 SRGAP2BP0DMP2 458 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms