RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 POMGNT1Q8WZA1 660 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 CCDC102AQ96A19 550 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 FAM163AQ96GL9 167 aaPredicted RBP10.25□□□□□ -0.77
VPS39-205ENST00000562258 PARP2Q9UGN5 583 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 PCDHA5Q9Y5H7 936 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 RFX7Q2KHR2 1363 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 hCG_1984214I3L0E3 225 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 PSAPP07602 524 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 TRAPPC10P48553 1259 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 HERVK_113P62684 666 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 CEP55Q53EZ4 464 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 ZNF713Q8N859 430 aaPredicted RBP10.25□□□□□ -0.77
VPS39-205ENST00000562258 RETREG2Q8NC44 543 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 LINC00301Q8NCQ3 95 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 TBC1D5Q92609 795 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 NACC1Q96RE7 527 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 SRRTQ9BXP5 876 aaKnown RBP10.25□□□□□ -0.77
VPS39-205ENST00000562258 RGL1Q9NZL6 768 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 COL4A3BPQ9Y5P4 624 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 ZEB2O60315 1214 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 FDX1P10109 184 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 MYL5Q02045 173 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 AP3B2Q13367 1082 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 TAAR1Q96RJ0 339 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 PCIF1Q9H4Z3 704 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 TAB2Q9NYJ8 693 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 TMX2Q9Y320 296 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 TRIM17Q9Y577 477 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 YBX3P16989 372 aaKnown RBP eCLIP10.24□□□□□ -0.77
VPS39-205ENST00000562258 PLCG1P19174 1290 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 CMA1P23946 247 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 WDR44Q5JSH3 913 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 SLC30A10Q6XR72 485 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 APBB1IPQ7Z5R6 666 aaPredicted RBP10.24□□□□□ -0.77
VPS39-205ENST00000562258 ZBTB33Q86T24 672 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 NBPF11Q86T75 865 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 CTNNBL1Q8WYA6 563 aaPredicted RBP10.24□□□□□ -0.77
VPS39-205ENST00000562258 FAM193BQ96PV7 902 aaPredicted RBP10.24□□□□□ -0.77
VPS39-205ENST00000562258 GBP3Q9H0R5 595 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 CLIC2O15247 247 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 CTSHP09668 335 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 LONP1P36776 959 aaKnown RBP10.24□□□□□ -0.77
VPS39-205ENST00000562258 ATN1P54259 1190 aaPredicted RBP10.24□□□□□ -0.77
VPS39-205ENST00000562258 PAK1Q13153 545 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 ARMCX5Q6P1M9 558 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 C7orf31Q8N865 590 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 ZBED2Q9BTP6 218 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 LMBRD1Q9NUN5 540 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 NUB1Q9Y5A7 615 aa10.24□□□□□ -0.77
VPS39-205ENST00000562258 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.24□□□□□ -0.77
VPS39-205ENST00000562258 AHDC1Q5TGY3 1603 aaPredicted RBP10.24□□□□□ -0.77
VPS39-205ENST00000562258 POTEB3A0JP26 581 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 POTECB2RU33 542 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 NFIBO00712 420 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 PTPRAP18433 802 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 PEX3P56589 373 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 NEDD9Q14511 834 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 POTEBQ6S5H4 581 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 MYOCDQ8IZQ8 938 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 NEK11Q8NG66 645 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 SPZ1Q9BXG8 430 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 KCNH4Q9UQ05 1017 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 SALL1Q9NSC2 1324 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 ASB14A6NK59 587 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 E9PMD0 336 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 RNASELQ05823 741 aaKnown RBP10.23□□□□□ -0.77
VPS39-205ENST00000562258 TMEM62Q0P6H9 643 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 ARHGAP44Q17R89 818 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 NELFBQ8WX92 580 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 MMS19Q96T76 1030 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 ASCC2Q9H1I8 757 aaPredicted RBP10.23□□□□□ -0.77
VPS39-205ENST00000562258 ZSWIM4Q9H7M6 989 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 KMT5AQ9NQR1 393 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 IL17RBQ9NRM6 502 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 CEP290O15078 2479 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 POTEFA5A3E0 1075 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 PEX10O60683 326 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 POTEIP0CG38 1075 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 PSMC4P43686 418 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 IFRD2Q12894 506 aaPredicted RBP10.23□□□□□ -0.77
VPS39-205ENST00000562258 TSGA10IPQ3SY00 556 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 FAM117BQ6P1L5 589 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 POTEGQ6S5H5 508 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 POTEEQ6S8J3 1075 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 ZNF354CQ86Y25 554 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 THNSL1Q8IYQ7 743 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 FAM43AQ8N2R8 423 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 NLRC4Q9NPP4 1024 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 TMEM63CQ9P1W3 806 aa10.23□□□□□ -0.77
VPS39-205ENST00000562258 WDR64B1ANS9 1081 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 SOCS7O14512 581 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 RGMBQ6NW40 437 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 KRBA2Q6ZNG9 492 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 CATSPER4Q7RTX7 472 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 CCDC186Q7Z3E2 898 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 HACE1Q8IYU2 909 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 OR6J1Q8NGC5 347 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 TAF4BQ92750 862 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 DYDC2Q96IM9 177 aa10.22□□□□□ -0.77
VPS39-205ENST00000562258 CLSTN2Q9H4D0 955 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms