RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 TAPT1Q6NXT6 567 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 PSRC1Q6PGN9 363 aaPredicted RBP9.41□□□□□ -0.9
TRAF3-205ENST00000558700 KIAA1211Q6ZU35 1233 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 TMEM199Q8N511 208 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 ENAHQ8N8S7 591 aaPredicted RBP9.41□□□□□ -0.9
TRAF3-205ENST00000558700 SLC17A8Q8NDX2 589 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 RUFY2Q8WXA3 655 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 CLEC4DQ8WXI8 215 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 PPP1R12CQ9BZL4 782 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 MAF1Q9H063 256 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 PDGFCQ9NRA1 345 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 LIMD1Q9UGP4 676 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 SUPT16HQ9Y5B9 1047 aaKnown RBP9.41□□□□□ -0.9
TRAF3-205ENST00000558700 DDX49Q9Y6V7 483 aaKnown RBP9.41□□□□□ -0.9
TRAF3-205ENST00000558700 SCN10AQ9Y5Y9 1956 aa9.41□□□□□ -0.9
TRAF3-205ENST00000558700 DYNC1LI2O43237 492 aaPredicted RBP9.4□□□□□ -0.9
TRAF3-205ENST00000558700 PARP1P09874 1014 aaKnown RBP9.4□□□□□ -0.9
TRAF3-205ENST00000558700 GSPT1P15170 499 aaKnown RBP9.4□□□□□ -0.9
TRAF3-205ENST00000558700 EDNRBP24530 442 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 EPHB4P54760 987 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 TRDNQ13061 729 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 ITGA7Q13683 1181 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 IFIT1BQ5T764 474 aaKnown RBP9.4□□□□□ -0.9
TRAF3-205ENST00000558700 SLC43A3Q8NBI5 491 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 SCFD2Q8WU76 684 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 SPIRE2Q8WWL2 714 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 ANKS1AQ92625 1134 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 FAM161BQ96MY7 647 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 GUCD1Q96NT3 240 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 PURBQ96QR8 312 aaKnown RBP9.4□□□□□ -0.9
TRAF3-205ENST00000558700 WDR11Q9BZH6 1224 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 MTIF3Q9H2K0 278 aaKnown RBP9.4□□□□□ -0.9
TRAF3-205ENST00000558700 HIPK3Q9H422 1215 aa9.4□□□□□ -0.9
TRAF3-205ENST00000558700 RBM47A0AV96 593 aaKnown RBP9.39□□□□□ -0.91
TRAF3-205ENST00000558700 RCCD1A6NED2 376 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 CD4P01730 458 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 DNAJB2P25686 324 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 PDE4CQ08493 712 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 RALYLQ86SE5 291 aaKnown RBP9.39□□□□□ -0.91
TRAF3-205ENST00000558700 MCF2L2Q86YR7 1114 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 ADGRF4Q8IZF3 695 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 RGS22Q8NE09 1264 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 OR6J1Q8NGC5 347 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 CALR3Q96L12 384 aaKnown RBP9.39□□□□□ -0.91
TRAF3-205ENST00000558700 ADAM33Q9BZ11 813 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 UBA5Q9GZZ9 404 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 IL25Q9H293 177 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 CPVLQ9H3G5 476 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 GDPD2Q9HCC8 539 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 ZSWIM5Q9P217 1185 aa9.39□□□□□ -0.91
TRAF3-205ENST00000558700 MRPL11Q9Y3B7 192 aaKnown RBP9.39□□□□□ -0.91
TRAF3-205ENST00000558700 GBF1Q92538 1859 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.38□□□□□ -0.91
TRAF3-205ENST00000558700 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.38□□□□□ -0.91
TRAF3-205ENST00000558700 ERICH2A1L162 156 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 SPTLC1O15269 473 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 MYL3P08590 195 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 CSF2RAP15509 400 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 PTGS1P23219 599 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 ABL2P42684 1182 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 PURAQ00577 322 aaKnown RBP9.38□□□□□ -0.91
TRAF3-205ENST00000558700 TTLL4Q14679 1199 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 QRICH1Q2TAL8 776 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 FBXO11Q86XK2 927 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 NSUN6Q8TEA1 469 aaKnown RBP9.38□□□□□ -0.91
TRAF3-205ENST00000558700 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.38□□□□□ -0.91
TRAF3-205ENST00000558700 MTG1Q9BT17 334 aaPredicted RBP9.38□□□□□ -0.91
TRAF3-205ENST00000558700 IL23AQ9NPF7 189 aa9.38□□□□□ -0.91
TRAF3-205ENST00000558700 B4GALT4O60513 344 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 KPNA6O60684 536 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 SUPT20HL2P0C7V6 817 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 TXNP10599 105 aaKnown RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 CD46P15529 392 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 CHMLP26374 656 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 PSMC6P62333 389 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 TRAF1Q13077 416 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 SART3Q15020 963 aaKnown RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 SEC23AQ15436 765 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 CSPP1Q1MSJ5 1256 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 TMEM240Q5SV17 173 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 TMEM63BQ5T3F8 832 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 SYTL5Q8TDW5 730 aaPredicted RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 CDX2Q99626 313 aaPredicted RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 NOC4LQ9BVI4 516 aaKnown RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 AMNQ9BXJ7 453 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 ALDH8A1Q9H2A2 487 aaPredicted RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 TTYH1Q9H313 450 aaPredicted RBP9.37□□□□□ -0.91
TRAF3-205ENST00000558700 JMJD4Q9H9V9 463 aa9.37□□□□□ -0.91
TRAF3-205ENST00000558700 GRIN2DO15399 1336 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 COL6A3P12111 3177 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 DDX11L8A8MPP1 907 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 KLRF2D3W0D1 207 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 ZBTB5O15062 677 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 SGSM2O43147 1006 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 AP1G2O75843 785 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 CYP21A2P08686 494 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 NUDT7P0C024 238 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 FOSL2P15408 326 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 CYP2C18P33260 490 aa9.36□□□□□ -0.91
TRAF3-205ENST00000558700 IRX6P78412 446 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms