RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 BTDP43251 543 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 ATP2B2Q01814 1243 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 TRAF1Q13077 416 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 CDCA2Q69YH5 1023 aaPredicted RBP12.04□□□□□ -0.48
USP3-206ENST00000558157 USP17L1Q7RTZ2 530 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 CCDC26Q8TAB7 109 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 SAAL1Q96ER3 474 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 CAPZA3Q96KX2 299 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 ZIM3Q96PE6 472 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 DNAJC7Q99615 494 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 CRNKL1Q9BZJ0 848 aaKnown RBP12.04□□□□□ -0.48
USP3-206ENST00000558157 NACAP1Q9BZK3 213 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 TAOK3Q9H2K8 898 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 EBF2Q9HAK2 575 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 CEP131Q9UPN4 1083 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 GAKO14976 1311 aa12.04□□□□□ -0.48
USP3-206ENST00000558157 ZNF213O14771 459 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 CYLC1P35663 651 aaPredicted RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 ANKRD20A8PQ5CZ79 823 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 TBC1D10CQ8IV04 446 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 MB21D2Q8IYB1 491 aaPredicted RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 CCDC170Q8IYT3 715 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 SH3RF3Q8TEJ3 882 aaPredicted RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 RRP36Q96EU6 259 aaKnown RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 CYFIP2Q96F07 1278 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 FHDC1Q9C0D6 1143 aaPredicted RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 FBXO2Q9UK22 296 aaPredicted RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 PDE2AO00408 941 aaPredicted RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 IRF6O14896 467 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 SRGAP2O75044 1071 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 IPO7O95373 1038 aaKnown RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 PDHBP11177 359 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 PRPHP41219 470 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 FKBP1AP62942 108 aaKnown RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 HDLBPQ00341 1268 aaKnown RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 RIPK1Q13546 671 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 CFAP58Q5T655 872 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 CHST3Q7LGC8 479 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 STK11IPQ8N1F8 1099 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 TRIM58Q8NG06 486 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.03□□□□□ -0.48
USP3-206ENST00000558157 ATP6V1G3Q96LB4 118 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 SCLT1Q96NL6 688 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 SNX12Q9UMY4 172 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 DAGLAQ9Y4D2 1042 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 DDX60LQ5H9U9 1706 aaKnown RBP12.03□□□□□ -0.48
USP3-206ENST00000558157 FOCADQ5VW36 1801 aa12.03□□□□□ -0.48
USP3-206ENST00000558157 A0A1W2PQC6 194 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 IDEP14735 1019 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 ATP1A2P50993 1020 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 SCNN1DP51172 638 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 PPP4CP60510 307 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 HERVK_113P62684 666 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 RASSF7Q02833 373 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 KRT31Q15323 416 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 RILPL1Q5EBL4 403 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 CREG2Q8IUH2 290 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 SLF2Q8IX21 1173 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 CCDC155Q8N6L0 562 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 TSEN2Q8NCE0 465 aaKnown RBP12.02□□□□□ -0.48
USP3-206ENST00000558157 RASSF8Q8NHQ8 419 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 NCOA7Q8NI08 942 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 KDM4CQ9H3R0 1056 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 GJB4Q9NTQ9 266 aa12.02□□□□□ -0.48
USP3-206ENST00000558157 SRPRBQ9Y5M8 271 aaKnown RBP12.02□□□□□ -0.48
USP3-206ENST00000558157 STK36Q9NRP7 1315 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 GPR75-ASB3A0A0A6YYF3 556 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 C5orf60A6NFR6 353 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 SNUPNO95149 360 aaKnown RBP12.02□□□□□ -0.49
USP3-206ENST00000558157 BAG3O95817 575 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 TCP1P17987 556 aaKnown RBP12.02□□□□□ -0.49
USP3-206ENST00000558157 COPB1P53618 953 aaKnown RBP12.02□□□□□ -0.49
USP3-206ENST00000558157 GUCY1A3Q02108 690 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 CTDSPL2Q05D32 466 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 C2orf54Q08AI8 447 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 MEA1Q16626 185 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 KIAA0825Q8IV33 1275 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 NOSTRINQ8IVI9 506 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 IFT20Q8IY31 132 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 NIM1KQ8IY84 436 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 SPATA4Q8NEY3 305 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 FAM163AQ96GL9 167 aaPredicted RBP12.02□□□□□ -0.49
USP3-206ENST00000558157 VPS33BQ9H267 617 aa12.02□□□□□ -0.49
USP3-206ENST00000558157 LUC7L2Q9Y383 392 aaKnown RBP12.02□□□□□ -0.49
USP3-206ENST00000558157 GMNCA6NCL1 334 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 E7EVH7 732 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 RAD17O75943 681 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 ITGB3BPQ13352 177 aaPredicted RBP12.01□□□□□ -0.49
USP3-206ENST00000558157 PDCD2Q16342 344 aaPredicted RBP12.01□□□□□ -0.49
USP3-206ENST00000558157 SH3RF1Q7Z6J0 888 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 RALYLQ86SE5 291 aaKnown RBP12.01□□□□□ -0.49
USP3-206ENST00000558157 WASF1Q92558 559 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 SPDL1Q96EA4 605 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 CHP1Q99653 195 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 LRRC1Q9BTT6 524 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 DCP1AQ9NPI6 582 aaPredicted RBP12.01□□□□□ -0.49
USP3-206ENST00000558157 JADE2Q9NQC1 790 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 CPSF2Q9P2I0 782 aaKnown RBP12.01□□□□□ -0.49
USP3-206ENST00000558157 TRIM10Q9UDY6 481 aa12.01□□□□□ -0.49
USP3-206ENST00000558157 DMGDHQ9UI17 866 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms