RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PCDHA13Q9Y5I0 950 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L10C9JJH3 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 KIF11P52732 1056 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 VAV2P52735 878 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 FAM193AP78312 1265 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 SLC7A5Q01650 507 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 VPS72Q15906 364 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 SKIDA1Q1XH10 827 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 LRRC55Q6ZSA7 311 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 UNC13DQ70J99 1090 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 NELFCDQ8IXH7 590 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 CERS5Q8N5B7 392 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 NAV1Q8NEY1 1877 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L15C9J2P7 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L13C9JLJ4 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L11C9JVI0 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L18D6R9N7 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L22D6RA61 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L17D6RBQ6 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L19D6RCP7 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L20D6RJB6 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 BUB1O43683 1085 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 TAL1P17542 331 aaPredicted RBP14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L24Q0WX57 530 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 USP17L6PQ6QN14 398 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 FAM114A1Q8IWE2 563 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 RAD54LQ92698 747 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 PURBQ96QR8 312 aaKnown RBP14.32□□□□□ -0.12
LDLR-207ENST00000558013 PCDHAC2Q9Y5I4 1007 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 MYH10P35580 1976 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 MYH1P12882 1939 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 E9PMD0 336 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 SERPINB2P05120 415 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 CAPN2P17655 700 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 CACNB3P54284 484 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 SPA17Q15506 151 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 CREG2Q8IUH2 290 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 ZFPM1Q8IX07 1006 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 CCDC170Q8IYT3 715 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 TXLNBQ8N3L3 684 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 RETREG2Q8NC44 543 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 EXOC4Q96A65 974 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 DEF6Q9H4E7 631 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 MAGEF1Q9HAY2 307 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 PODXL2Q9NZ53 605 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 DMGDHQ9UI17 866 aaKnown RBP14.31□□□□□ -0.12
LDLR-207ENST00000558013 COL24A1Q17RW2 1714 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 MPHOSPH10O00566 681 aaKnown RBP14.31□□□□□ -0.12
LDLR-207ENST00000558013 AKR1B10O60218 316 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 SYF2O95926 243 aaKnown RBP14.31□□□□□ -0.12
LDLR-207ENST00000558013 SNAP25P60880 206 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 GPS2Q13227 327 aa14.31□□□□□ -0.12
LDLR-207ENST00000558013 GYS1P13807 737 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 FXR2P51116 673 aaKnown RBP eCLIP14.3□□□□□ -0.121e-6■□□□□ 10.3
LDLR-207ENST00000558013 IRX5P78411 483 aaPredicted RBP14.3□□□□□ -0.12
LDLR-207ENST00000558013 RASSF7Q02833 373 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 ARID5AQ03989 594 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 KCNMA1Q12791 1236 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 DOK7Q18PE1 504 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 DNAAF5Q86Y56 855 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 BAP1Q92560 729 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 LRRC1Q9BTT6 524 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 FAM204AQ9H8W3 233 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 BTAF1O14981 1849 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 RGL2O15211 777 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 STAT3P40763 770 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 TAF3Q5VWG9 929 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 KRT79Q5XKE5 535 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 MTMR8Q96EF0 704 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 BCAS3Q9H6U6 928 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 DDX25Q9UHL0 483 aaKnown RBP14.3□□□□□ -0.12
LDLR-207ENST00000558013 CDK5RAP2Q96SN8 1893 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 EIF3JO75822 258 aaKnown RBP14.3□□□□□ -0.12
LDLR-207ENST00000558013 SLC1A4P43007 532 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 GABPAQ06546 454 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 NFIAQ12857 509 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 CRY2Q49AN0 593 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 DNAJC19Q96DA6 116 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 MS4A14Q96JA4 679 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 SH2D4AQ9H788 454 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 KCNQ5Q9NR82 932 aa14.3□□□□□ -0.12
LDLR-207ENST00000558013 GAKO14976 1311 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 ZC3H4Q9UPT8 1303 aaKnown RBP14.29□□□□□ -0.12
LDLR-207ENST00000558013 TRAF5O00463 557 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 MARCH6O60337 910 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 ATP2B4P23634 1241 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 NOVP48745 357 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 MAN2A1Q16706 1144 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 TMEM266Q2M3C6 531 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 GUF1Q8N442 669 aaKnown RBP14.29□□□□□ -0.12
LDLR-207ENST00000558013 HPCAL4Q9UM19 191 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 SNX12Q9UMY4 172 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 A0A1W2PQJ5 194 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 ESYT2A0FGR8 921 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 FAM170AA1A519 330 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 TLR2O60603 784 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 RNF40O75150 1001 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 GGCXP38435 758 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 ZNF543Q08ER8 600 aa14.29□□□□□ -0.12
LDLR-207ENST00000558013 COASYQ13057 564 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms