RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ORC4O43929 436 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 PDHBP11177 359 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 KCNA5P22460 613 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 ARHGAP1Q07960 439 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 MBTPS1Q14703 1052 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 LEXMQ3ZCV2 418 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 FAM117BQ6P1L5 589 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 CCDC62Q6P9F0 684 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 TRAF7Q6Q0C0 670 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 SESTD1Q86VW0 696 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 GJD3Q8N144 294 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 CCDC155Q8N6L0 562 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 AFG1LQ8WV93 481 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 WNT8BQ93098 351 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 TGS1Q96RS0 853 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 TMEM47Q9BQJ4 181 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 ZBED2Q9BTP6 218 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 DCTPP1Q9H773 170 aa9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 TTC41PQ6P2S7 1318 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 WDR19Q8NEZ3 1342 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 TOP1P11387 765 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 CKBP12277 381 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 TRIM71Q2Q1W2 868 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 PTCRAQ6ISU1 281 aaPredicted RBP9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 DNERQ8NFT8 737 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 RAD9AQ99638 391 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 C17orf80Q9BSJ5 609 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 CHMP4BQ9H444 224 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 COL20A1Q9P218 1284 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 HDAC6Q9UBN7 1215 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 GTF2IRD1Q9UHL9 959 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 ANAPC4Q9UJX5 808 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 PLXNA4Q9HCM2 1894 aa9.62□□□□□ -0.87
CCDC88C-214ENST00000557507 TTC3P53804 2025 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 ABHD14A-ACY1A0A1B0GW23 586 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 FGRP09769 529 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 ZNF286BP0CG31 522 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 SSTR3P32745 418 aaPredicted RBP9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 ZNF543Q08ER8 600 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 MKRN4PQ13434 485 aaPredicted RBP9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 LY6KQ17RY6 165 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 USH1GQ495M9 461 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 RRP12Q5JTH9 1297 aaKnown RBP9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 CHST3Q7LGC8 479 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 MPHOSPH6Q99547 160 aaKnown RBP9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 CPVLQ9H3G5 476 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 SPTBN4Q9H254 2564 aa9.61□□□□□ -0.87
CCDC88C-214ENST00000557507 GRXCR2A6NFK2 248 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 H3BQ06 376 aaPredicted RBP9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 F2P00734 622 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 GH1P01241 217 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 SNHG28P0DPA3 235 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 PSEN2P49810 448 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 MRE11P49959 708 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 ZNF200P98182 395 aaPredicted RBP9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 NHLH1Q02575 133 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 HIC1Q14526 733 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 ZNF618Q5T7W0 954 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 SEPT14Q6ZU15 432 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 FBXO22Q8NEZ5 403 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 NEK9Q8TD19 979 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 SP7Q8TDD2 431 aaPredicted RBP9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 TBC1D5Q92609 795 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 TAAR1Q96RJ0 339 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 UIMC1Q96RL1 719 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 ALG1Q9BT22 464 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 TOMM22Q9NS69 142 aa9.6□□□□□ -0.87
CCDC88C-214ENST00000557507 HAS3O00219 553 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 LGR5O75473 907 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 PARNO95453 639 aaKnown RBP9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 GOLGA8HP0CJ92 632 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 CASTP20810 708 aaKnown RBP9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 HTRA4P83105 476 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 PTK7Q13308 1070 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 IKBKEQ14164 716 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 MFSD10Q14728 455 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 DGKDQ16760 1214 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 KIAA0753Q2KHM9 967 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 MYOCDQ8IZQ8 938 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 C7orf31Q8N865 590 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 SYTL5Q8TDW5 730 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 ANKS1AQ92625 1134 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 MRPL38Q96DV4 380 aaKnown RBP9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 CRBNQ96SW2 442 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 TCP11L1Q9NUJ3 509 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 PNMA2Q9UL42 364 aa9.59□□□□□ -0.87
CCDC88C-214ENST00000557507 SALL3Q9BXA9 1300 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 A0A0D9SFI3 127 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 B4DLN1 442 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 DCXO43602 365 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 EFCAB14O75071 495 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 ALADP13716 330 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 MX1P20591 662 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 MRPL12P52815 198 aaKnown RBP9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 HAND2P61296 217 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 ZP2Q05996 745 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 ALX1Q15699 326 aa9.58□□□□□ -0.88
CCDC88C-214ENST00000557507 CDC37Q16543 378 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms