RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 GNA11P29992 359 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 TTLL4Q14679 1199 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 LRRC41Q15345 812 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 DUSP28Q4G0W2 176 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 GJC2Q5T442 439 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-228ENST00000557302 SEPT14Q6ZU15 432 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 TLK2Q86UE8 772 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 ZSCAN31Q96LW9 406 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-228ENST00000557302 ZMYND12Q9H0C1 365 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 UPF3AQ9H1J1 476 aaKnown RBP15.58■□□□□ 0.08
SHMT2-228ENST00000557302 EHMT1Q9H9B1 1298 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 VPS54Q9P1Q0 977 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 PCDHA6Q9UN73 950 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 GNEQ9Y223 722 aaKnown RBP15.58■□□□□ 0.08
SHMT2-228ENST00000557302 PCDHA8Q9Y5H6 950 aa15.58■□□□□ 0.08
SHMT2-228ENST00000557302 NKRFO15226 690 aaKnown RBP eCLIP15.57■□□□□ 0.08
SHMT2-228ENST00000557302 CTDNEP1O95476 244 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 FOSP01100 380 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-228ENST00000557302 C6orf222P0C671 652 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-228ENST00000557302 GJA9P57773 515 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 AP3B2Q13367 1082 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 XRRA1Q6P2D8 792 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 FAM177A1Q8N128 213 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-228ENST00000557302 BICD2Q8TD16 824 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 AP5M1Q9H0R1 490 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 C11orf49Q9H6J7 331 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 SH2B1Q9NRF2 756 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-228ENST00000557302 ORC3Q9UBD5 711 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-228ENST00000557302 Q9Y3F1 56 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 FRMPD3Q5JV73 1810 aa15.57■□□□□ 0.08
SHMT2-228ENST00000557302 DYNC1LI2O43237 492 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-228ENST00000557302 STAM2O75886 525 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 TXNP10599 105 aaKnown RBP15.56■□□□□ 0.08
SHMT2-228ENST00000557302 COL6A1P12109 1028 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 NLRP5P59047 1200 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 GNPTABQ3T906 1256 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 TMEM63BQ5T3F8 832 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 PCNX4Q63HM2 1172 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 MCTP2Q6DN12 878 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 REXO1Q8N1G1 1221 aaKnown RBP15.56■□□□□ 0.08
SHMT2-228ENST00000557302 WASF1Q92558 559 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 HTATIP2Q9BUP3 242 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 ANO3Q9BYT9 981 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 MRVI1Q9Y6F6 885 aa15.56■□□□□ 0.08
SHMT2-228ENST00000557302 MYADML2A6NDP7 307 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 RGS20O76081 388 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 ARIH2O95376 493 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 SLC34A2O95436 690 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 CST5P28325 142 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 CLK2P49760 499 aaKnown RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 MRPS9P82933 396 aaKnown RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 ST3GAL1Q11201 340 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 GNASQ5JWF2 1037 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 JAKMIP3Q5VZ66 844 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 CCDC62Q6P9F0 684 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 KCNV1Q6PIU1 500 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 CCDC83Q8IWF9 413 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 PCSK9Q8NBP7 692 aaKnown RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 NSUN7Q8NE18 718 aaKnown RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 KLHDC9Q8NEP7 349 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 ZFP91Q96JP5 570 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 PGBD1Q96JS3 809 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 AIFM3Q96NN9 605 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 TSEN34Q9BSV6 310 aaKnown RBP15.55■□□□□ 0.08
SHMT2-228ENST00000557302 TMEM260Q9NX78 707 aa15.55■□□□□ 0.08
SHMT2-228ENST00000557302 DTNBO60941 627 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 XBP1P17861 261 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 PTGS1P23219 599 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 MCM2P49736 904 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 NKX3-2P78367 333 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 FSCN1Q16658 493 aaKnown RBP15.54■□□□□ 0.08
SHMT2-228ENST00000557302 LY6KQ17RY6 165 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 PRPF38BQ5VTL8 546 aaKnown RBP15.54■□□□□ 0.08
SHMT2-228ENST00000557302 OR6J1Q8NGC5 347 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 INPP4AQ96PE3 977 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-228ENST00000557302 SENP6Q9GZR1 1112 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-228ENST00000557302 RTEL1Q9NZ71 1219 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 PCDHA4Q9UN74 947 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 PHF24Q9UPV7 400 aa15.54■□□□□ 0.08
SHMT2-228ENST00000557302 MOXD2PA6NHM9 499 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 CTAGE5O15320 804 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 ZEB2O60315 1214 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 JAK2O60674 1132 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 GH1P01241 217 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 FDPSP14324 419 aaKnown RBP15.53■□□□□ 0.08
SHMT2-228ENST00000557302 SREBF1P36956 1147 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 CPT1AP50416 773 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 IRX5P78411 483 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-228ENST00000557302 BEX3Q00994 111 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 KCNA10Q16322 511 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 BRDTQ58F21 947 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-228ENST00000557302 CCSAPQ6IQ19 270 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-228ENST00000557302 GALNT17Q6IS24 598 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 NLRX1Q86UT6 975 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 COPS5Q92905 334 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 FERMT2Q96AC1 680 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 LLPHQ9BRT6 129 aaKnown RBP15.53■□□□□ 0.08
SHMT2-228ENST00000557302 ALG1Q9BT22 464 aa15.53■□□□□ 0.08
SHMT2-228ENST00000557302 DDX41Q9UJV9 622 aaKnown RBP15.53■□□□□ 0.08
SHMT2-228ENST00000557302 ADAMTS3O15072 1205 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms