RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	MTUS1	Q9ULD2	1270 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	TRIO	O75962	3097 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	BRWD1	Q9NSI6	2320 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	TANC1	Q9C0D5	1861 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	MUC6	Q6W4X9	2439 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	PLIN4	Q96Q06	1357 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	C5orf42	Q9H799	3197 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	PTPDC1	A2A3K4	754 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	PRR33	A8MZF0	331 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	RGS20	O76081	388 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	BAIAP3	O94812	1187 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	ICAM1	P05362	532 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	IL9	P15248	144 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	KCNJ6	P48051	423 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	PDE4B	Q07343	736 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	BFSP2	Q13515	415 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	GJD3	Q8N144	294 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	UIMC1	Q96RL1	719 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	ZBED2	Q9BTP6	218 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	LMCD1	Q9NZU5	365 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	STX8	Q9UNK0	236 aa		10.24	□□□□□ -0.77
SYNE2-222	ENST00000556725	LINC01553	A4QN01	128 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725		A6NJR5	290 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	ARIH2	O95376	493 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	GNAT2	P19087	354 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	KCNA5	P22460	613 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	CALML3	P27482	149 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	MRE11	P49959	708 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	ERVK-21	P61565	698 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	CTDSPL2	Q05D32	466 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	PTPN11	Q06124	597 aa	Predicted RBP	10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	PPARA	Q07869	468 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	PTGIS	Q16647	500 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	GDF6	Q6KF10	455 aa	Predicted RBP	10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	FAM117B	Q6P1L5	589 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	SLC30A10	Q6XR72	485 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	CLEC4D	Q8WXI8	215 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	DHX38	Q92620	1227 aa	Known RBP	10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	LRRCC1	Q9C099	1032 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	RANBP17	Q9H2T7	1088 aa	Known RBP	10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	ECHDC1	Q9NTX5	307 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	ADD3	Q9UEY8	706 aa	Known RBP	10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	NOD1	Q9Y239	953 aa		10.23	□□□□□ -0.77
SYNE2-222	ENST00000556725	NBN	O60934	754 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	GJB5	O95377	273 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	TXN	P10599	105 aa	Known RBP	10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	SSTR3	P32745	418 aa	Predicted RBP	10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	PPP2R5B	Q15173	497 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	CCDC96	Q2M329	555 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	LEXM	Q3ZCV2	418 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	ANKS1A	Q92625	1134 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	TGS1	Q96RS0	853 aa	Known RBP	10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	RAD9A	Q99638	391 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	GPCPD1	Q9NPB8	672 aa		10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
SYNE2-222	ENST00000556725	GRXCR2	A6NFK2	248 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	TSPY2	A6NKD2	308 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	NKRF	O15226	690 aa	Known RBP eCLIP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	FOXP2	O15409	715 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	KPNA6	O60684	536 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	ZFY	P08048	801 aa	Predicted RBP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	CKB	P12277	381 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	SELP	P16109	830 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	EDNRB	P24530	442 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	RPS6	P62753	249 aa	Known RBP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	NHLH1	Q02575	133 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	PDE4D	Q08499	809 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	BRDT	Q58F21	947 aa	Predicted RBP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	SYDE2	Q5VT97	1194 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	CNKSR3	Q6P9H4	555 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	BTNL9	Q6UXG8	535 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	AFG1L	Q8WV93	481 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	KAT2B	Q92831	832 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	FBXL18	Q96ME1	805 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	C17orf80	Q9BSJ5	609 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	NAPB	Q9H115	298 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	RYDEN	Q9NUL5	291 aa	Known RBP	10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	DDX19B	Q9UMR2	479 aa		10.21	□□□□□ -0.77
SYNE2-222	ENST00000556725	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.21	□□□□□ -0.78
SYNE2-222	ENST00000556725	SI	P14410	1827 aa		10.21	□□□□□ -0.78
SYNE2-222	ENST00000556725	LOC102724159	A0A0B4J2E5	919 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725		H3BQ06	376 aa	Predicted RBP	10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	CXCL10	P02778	98 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	SLC3A2	P08195	630 aa	Known RBP	10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	NOV	P48745	357 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	PWP2	Q15269	919 aa	Known RBP	10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	LY6K	Q17RY6	165 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	CCDC62	Q6P9F0	684 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	TRAF7	Q6Q0C0	670 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	RNF207	Q6ZRF8	634 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	LRRC8D	Q7L1W4	858 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	CAGE1	Q8TC20	777 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	AFAP1L1	Q8TED9	768 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	SCFD2	Q8WU76	684 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	DCAF4	Q8WV16	495 aa		10.2	□□□□□ -0.78
SYNE2-222	ENST00000556725	TBC1D5	Q92609	795 aa		10.2	□□□□□ -0.78

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