RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 EPB41L4BQ9H329 900 aa6.6□□□□□ -1.35
SRP54-211ENST00000556445 PHAXQ9H814 394 aaKnown RBP6.6□□□□□ -1.35
SRP54-211ENST00000556445 ERVK13-1Q9NX77 482 aa6.6□□□□□ -1.35
SRP54-211ENST00000556445 SLC12A7Q9Y666 1083 aa6.6□□□□□ -1.35
SRP54-211ENST00000556445 CFAP65Q6ZU64 1925 aaKnown RBP6.6□□□□□ -1.35
SRP54-211ENST00000556445 ARHGEF40Q8TER5 1519 aa6.6□□□□□ -1.35
SRP54-211ENST00000556445 ZFYVE9O95405 1425 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 PPLO60437 1756 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 FADS2P1A8MWK0 482 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 MAFGO15525 162 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 KRT1P04264 644 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 ATF4P18848 351 aaPredicted RBP6.59□□□□□ -1.35
SRP54-211ENST00000556445 ENDOUP21128 410 aaKnown RBP6.59□□□□□ -1.35
SRP54-211ENST00000556445 HSD3B2P26439 372 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 CASP7P55210 303 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 JAG1P78504 1218 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 SOGA3Q5TF21 947 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 CEP128Q6ZU80 1094 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 FIBCD1Q8N539 461 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 FBXO15Q8NCQ5 510 aaPredicted RBP6.59□□□□□ -1.35
SRP54-211ENST00000556445 CPLX3Q8WVH0 158 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 KLHL6Q8WZ60 621 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 SLC38A3Q99624 504 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 HAUS7Q99871 368 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 SLC12A9Q9BXP2 914 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 KLHL25Q9H0H3 589 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 SLC6A17Q9H1V8 727 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 DCP1AQ9NPI6 582 aaPredicted RBP6.59□□□□□ -1.35
SRP54-211ENST00000556445 TNFRSF10DQ9UBN6 386 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 STRIP2Q9ULQ0 834 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 PCDHB10Q9UN67 800 aa6.59□□□□□ -1.35
SRP54-211ENST00000556445 MROH2AA6NES4 1674 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 PREX1Q8TCU6 1659 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 EIF3JO75822 258 aaKnown RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 SETQ01105 290 aaPredicted RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 GNPTABQ3T906 1256 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 NOL9Q5SY16 702 aaKnown RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 RNF187Q5TA31 235 aaPredicted RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 SPTY2D1Q68D10 685 aaPredicted RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 SYDE1Q6ZW31 735 aaPredicted RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 CILP2Q8IUL8 1156 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 TMEM52Q8NDY8 209 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 TESK2Q96S53 571 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 PLCD4Q9BRC7 762 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 CDADC1Q9BWV3 514 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 AP5S1Q9NUS5 200 aa6.58□□□□□ -1.36
SRP54-211ENST00000556445 GPR55Q9Y2T6 319 aaPredicted RBP6.58□□□□□ -1.36
SRP54-211ENST00000556445 SYNMO15061 1565 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 UGGT1Q9NYU2 1555 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 A0A087WZG4 1122 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 TSPAN15O95858 294 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 ITGA4P13612 1032 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 SLC7A5Q01650 507 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 GNL2Q13823 731 aaKnown RBP6.57□□□□□ -1.36
SRP54-211ENST00000556445 SLC14A2Q15849 920 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 PKN1Q16512 942 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 PLEKHG6Q3KR16 790 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 HSF5Q4G112 596 aaPredicted RBP6.57□□□□□ -1.36
SRP54-211ENST00000556445 APBB1IPQ7Z5R6 666 aaPredicted RBP6.57□□□□□ -1.36
SRP54-211ENST00000556445 SLCO6A1Q86UG4 719 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 PMM1Q92871 262 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 UBA5Q9GZZ9 404 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 OSBPL2Q9H1P3 480 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 C14orf93Q9H972 538 aaKnown RBP6.57□□□□□ -1.36
SRP54-211ENST00000556445 SUSD2Q9UGT4 822 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 COL4A3BPQ9Y5P4 624 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 ERVK-7P63135 1459 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 PIK3C2GO75747 1445 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 MYO3AQ8NEV4 1616 aa6.57□□□□□ -1.36
SRP54-211ENST00000556445 BRD4O60885 1362 aaPredicted RBP6.57□□□□□ -1.36
SRP54-211ENST00000556445 SIGLEC1Q9BZZ2 1709 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 ADGRF5Q8IZF2 1346 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 MYBBP1AQ9BQG0 1328 aaKnown RBP6.56□□□□□ -1.36
SRP54-211ENST00000556445 U2SURPO15042 1029 aaKnown RBP6.56□□□□□ -1.36
SRP54-211ENST00000556445 EPHX1P07099 455 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 GSTM1P09488 218 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 DNAJA1P31689 397 aaKnown RBP6.56□□□□□ -1.36
SRP54-211ENST00000556445 RTP1P59025 263 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 KIR3DS1Q14943 382 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 PPP2R5EQ16537 467 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 CWF19L1Q69YN2 538 aaKnown RBP6.56□□□□□ -1.36
SRP54-211ENST00000556445 SIRT2Q8IXJ6 389 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 ANAPC16Q96DE5 110 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 PPP1R16BQ96T49 567 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 KRTAP9-9Q9BYP9 154 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 KRTAP9-4Q9BYQ2 154 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 IRF2BPLQ9H1B7 796 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 NOL6Q9H6R4 1146 aaKnown RBP6.56□□□□□ -1.36
SRP54-211ENST00000556445 PCDH12Q9NPG4 1184 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 CRTAC1Q9NQ79 661 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 WHRNQ9P202 907 aa6.56□□□□□ -1.36
SRP54-211ENST00000556445 NEXMIFQ5QGS0 1516 aa6.55□□□□□ -1.36
SRP54-211ENST00000556445 KDM5AP29375 1690 aaKnown RBP6.55□□□□□ -1.36
SRP54-211ENST00000556445 CENPJQ9HC77 1338 aaPredicted RBP6.55□□□□□ -1.36
SRP54-211ENST00000556445 MYOCOSA0A1B0GUC4 107 aa6.55□□□□□ -1.36
SRP54-211ENST00000556445 DBX1A6NMT0 343 aa6.55□□□□□ -1.36
SRP54-211ENST00000556445 IDI1Q13907 227 aa6.55□□□□□ -1.36
SRP54-211ENST00000556445 RPUSD2Q8IZ73 545 aaKnown RBP6.55□□□□□ -1.36
SRP54-211ENST00000556445 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.55□□□□□ -1.36
SRP54-211ENST00000556445 ADCY4Q8NFM4 1077 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms