RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 SEPT14Q6ZU15 432 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 CENPQQ7L2Z9 268 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 MCF2L2Q86YR7 1114 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 ZNF654Q8IZM8 581 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 NSUN6Q8TEA1 469 aaKnown RBP10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 AFG1LQ8WV93 481 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 KAT2BQ92831 832 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 GPKOWQ92917 476 aaPredicted RBP eCLIP10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 PDCD2LQ9BRP1 358 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 MTG1Q9BT17 334 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 HIPK3Q9H422 1215 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 POLR3EQ9NVU0 708 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 CXXC1Q9P0U4 656 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 PCDHA1Q9Y5I3 950 aa10.81□□□□□ -0.68
VIPAS39-207ENST00000555854 GRXCR1A8MXD5 290 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 DDAH1O94760 285 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 NR3C2P08235 984 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 RXRAP19793 462 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 PPIGQ13427 754 aaKnown RBP eCLIP10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 PGM5Q15124 567 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 NBPF20Q3BBV1 942 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 ZNF697Q5TEC3 545 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 ZNF365Q70YC5 407 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 RAB11FIP4Q86YS3 637 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 SCLYQ96I15 445 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 ZFP91Q96JP5 570 aaPredicted RBP10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 IWS1Q96ST2 819 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 SPZ1Q9BXG8 430 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 LRRC2Q9BYS8 371 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 SEMA6BQ9H3T3 888 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 IL23AQ9NPF7 189 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 ANO2Q9NQ90 1003 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 DDX41Q9UJV9 622 aaKnown RBP10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 GBF1Q92538 1859 aa10.8□□□□□ -0.68
VIPAS39-207ENST00000555854 TET1Q8NFU7 2136 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 TRANK1O15050 2925 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 PNMA6FA0A0J9YX94 578 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 ERICH2A1L162 156 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 GH1P01241 217 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 CENPBP07199 599 aaPredicted RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 DNAJB2P25686 324 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 PBX2P40425 430 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 SEMA3FQ13275 785 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 SART3Q15020 963 aaKnown RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 STXBP2Q15833 593 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 ARHGEF16Q5VV41 709 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 PSRC1Q6PGN9 363 aaPredicted RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 CATIPQ7Z7H3 387 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 CMTR1Q8N1G2 835 aaKnown RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 TMEM199Q8N511 208 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 SRBD1Q8N5C6 995 aaKnown RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 PIBF1Q8WXW3 757 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 DHX38Q92620 1227 aaKnown RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 EMID1Q96A84 441 aaPredicted RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 MPHOSPH6Q99547 160 aaKnown RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 CDX2Q99626 313 aaPredicted RBP10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 MTA3Q9BTC8 594 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 SEZ6LQ9BYH1 1024 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 BCAS3Q9H6U6 928 aa10.79□□□□□ -0.68
VIPAS39-207ENST00000555854 EIF3JO75822 258 aaKnown RBP10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 ZNF286BP0CG31 522 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 HOXD8P13378 290 aaPredicted RBP10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 UBA1P22314 1058 aaKnown RBP10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 MRPS9P82933 396 aaKnown RBP10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 SP2Q02086 613 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 HIC1Q14526 733 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 ADCK5Q3MIX3 580 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 NFRKBQ6P4R8 1299 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 VSIG10LQ86VR7 867 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 RASEFQ8IZ41 740 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 MYLIPQ8WY64 445 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 HERVK_113Q902F9 699 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 TCEANC2Q96MN5 208 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 MAP3K14Q99558 947 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 PBX4Q9BYU1 374 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 TELO2Q9Y4R8 837 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 MRVI1Q9Y6F6 885 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 PTPRSQ13332 1948 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 CUL9Q8IWT3 2517 aa10.78□□□□□ -0.68
VIPAS39-207ENST00000555854 DOCK5Q9H7D0 1870 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 TMEM265A0A087WTH1 108 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 hCG_1642624A0A1W2PR95 340 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 B4DLN1 442 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 GCOM1H8Y6P7 765 aaPredicted RBP10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 HAS3O00219 553 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 MEIS2O14770 477 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 SORBS3O60504 671 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 F2P00734 622 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 POLR2MP0CAP2 368 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 MYCLP12524 364 aaPredicted RBP10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 MCM5P33992 734 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 LIFRP42702 1097 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 MRPL12P52815 198 aaKnown RBP10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 GPNMBQ14956 572 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 HSDL1Q3SXM5 330 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 FAM47CQ5HY64 1035 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 GDF6Q6KF10 455 aaPredicted RBP10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 TMTC3Q6ZXV5 915 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 SESTD1Q86VW0 696 aa10.77□□□□□ -0.69
VIPAS39-207ENST00000555854 SGMS1Q86VZ5 419 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms