RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 MKRN1Q9UHC7 482 aaKnown RBP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 SAT1P21673 171 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 NR2F2P24468 414 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 PALM2Q8IXS6 379 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 BBS5Q8N3I7 341 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 HGSO14964 777 aaPredicted RBP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 GAP43P17677 238 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 CTTNQ14247 550 aaKnown RBP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 ADCK5Q3MIX3 580 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 TMEM106CQ9BVX2 250 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 FBXO40Q9UH90 709 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 SSH2Q76I76 1423 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 BUB1O43683 1085 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 NFIXQ14938 502 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 SEPT2Q15019 361 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CAPN12Q6ZSI9 719 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 MAP4K1Q92918 833 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 LSG1Q9H089 658 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 RBSNQ9H1K0 784 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ZCCHC11Q5TAX3 1644 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ATP8B3O60423 1300 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 PNMA6FA0A0J9YX94 578 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 USP17L10C9JJH3 530 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 GOLGA8SH3BPF8 625 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 LAD1O00515 517 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 MYO1EQ12965 1108 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 STXBP2Q15833 593 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 EXOC3L4Q17RC7 722 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CFAP221Q4G0U5 840 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 MFSD14CQ5VZR4 134 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 RAET1EQ8TD07 263 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 PCDHA7Q9UN72 937 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ARHGEF37A1IGU5 675 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 H7C1W4 665 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CYP19A1P11511 503 aaPredicted RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CAPN2P17655 700 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 DDIT3P35638 169 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 SCARA5Q6ZMJ2 495 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 FAM76AQ8TAV0 307 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 IQCDQ96DY2 449 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 KIAA1468Q9P260 1216 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 SLC12A6Q9UHW9 1150 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 TACC3Q9Y6A5 838 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 H7C0C1 242 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CD58P19256 250 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CMA1P23946 247 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ATP5OP48047 213 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 MUM1L1Q5H9M0 696 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ADAT2Q7Z6V5 191 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 KRT12Q99456 494 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 XPO4Q9C0E2 1151 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ELP3Q9H9T3 547 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 LRRC4Q9HBW1 653 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 DENND3A2RUS2 1198 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 PFDN6O15212 129 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 GNAT1P11488 350 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 MCAMP43121 646 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 FAM186BQ8IYM0 893 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 RMDN3Q96TC7 470 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CCDC94Q9BW85 323 aaPredicted RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 SLC38A10Q9HBR0 1119 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 LMCD1Q9NZU5 365 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 TSKSQ9UJT2 592 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 FNDC3AQ9Y2H6 1198 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CCDC160A6NGH7 325 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 KCNK3O14649 394 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 GRIN3BO60391 1043 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 PSMC2P35998 433 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ADCY8P40145 1251 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ERCC6LQ2NKX8 1250 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 C1orf228Q6PIY5 440 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 SIX6OS1Q8N1H7 587 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 RIC8AQ9NPQ8 531 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 RRAGDQ9NQL2 400 aaPredicted RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CALCOCO1Q9P1Z2 691 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 ZSWIM5Q9P217 1185 aa8.97□□□□□ -0.97
SYNE2-220ENST00000555612 CPSF3Q9UKF6 684 aaKnown RBP8.97□□□□□ -0.97
SYNE2-220ENST00000555612 TNPO2O14787 897 aaKnown RBP8.96□□□□□ -0.97
SYNE2-220ENST00000555612 ARHGAP6O43182 974 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 RFX6Q8HWS3 928 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 MICALL2Q8IY33 904 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 MMP19Q99542 508 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 LAMC1P11047 1609 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 I3L4J1 428 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 PSMD6Q15008 389 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 RINT1Q6NUQ1 792 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 FBXO18Q8NFZ0 1043 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 EPSTI1Q96J88 318 aa8.96□□□□□ -0.97
SYNE2-220ENST00000555612 RPF1Q9H9Y2 349 aaKnown RBP8.96□□□□□ -0.97
SYNE2-220ENST00000555612 GPBP1L1Q9HC44 474 aaPredicted RBP8.96□□□□□ -0.97
SYNE2-220ENST00000555612 SH2B2O14492 632 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-220ENST00000555612 BPIFB4P59827 614 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 BFSP1Q12934 665 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 HDXQ7Z353 690 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 RASEFQ8IZ41 740 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 OR8K1Q8NGG5 319 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 DCAF4Q8WV16 495 aa8.96□□□□□ -0.98
SYNE2-220ENST00000555612 FOXP1Q9H334 677 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-220ENST00000555612 RNF146Q9NTX7 359 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms