RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 CALM1P0DP23 149 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 CALM2P0DP24 149 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 CALM3P0DP25 149 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 LIFRP42702 1097 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 GNAQP50148 359 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 HSD17B4P51659 736 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 AK2P54819 239 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 ITGA7Q13683 1181 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 COL9A3Q14050 684 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-214ENST00000554604 KRT32Q14532 448 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 SLC35G1Q2M3R5 365 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 RUFY3Q7L099 469 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 SAMD3Q8N6K7 520 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 RRP36Q96EU6 259 aaKnown RBP14.31□□□□□ -0.12
SHMT2-214ENST00000554604 ZSCAN31Q96LW9 406 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-214ENST00000554604 LZTS2Q9BRK4 669 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 LRRC2Q9BYS8 371 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 PXMP2Q9NR77 195 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 PDRG1Q9NUG6 133 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 SEC63Q9UGP8 760 aaKnown RBP14.31□□□□□ -0.12
SHMT2-214ENST00000554604 SLC12A7Q9Y666 1083 aa14.31□□□□□ -0.12
SHMT2-214ENST00000554604 GCOM1H8Y6P7 765 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-214ENST00000554604 NR3C2P08235 984 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 POLR2MP0CAP2 368 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 ITGB8P26012 769 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 HOXA13P31271 388 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-214ENST00000554604 FPGSQ05932 587 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 ADCK5Q3MIX3 580 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 SYNE3Q6ZMZ3 975 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 FAM126BQ8IXS8 530 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 NEK1Q96PY6 1258 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 SPZ1Q9BXG8 430 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 SEZ6LQ9BYH1 1024 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 SCN10AQ9Y5Y9 1956 aa14.3□□□□□ -0.12
SHMT2-214ENST00000554604 EIF3JO75822 258 aaKnown RBP14.29□□□□□ -0.12
SHMT2-214ENST00000554604 TIMP1P01033 207 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 MYCLP12524 364 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-214ENST00000554604 RXRAP19793 462 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 SMARCA1P28370 1054 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 PSMC6P62333 389 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 GHRHRQ02643 423 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 SHHQ15465 462 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 FCHSD1Q86WN1 690 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 COPS5Q92905 334 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 SH2B1Q9NRF2 756 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-214ENST00000554604 TBX21Q9UL17 535 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 MYO9BQ13459 2157 aa14.29□□□□□ -0.12
SHMT2-214ENST00000554604 A6NJR5 290 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 GOLGA6L22H0YM25 854 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 TRAK2O60296 914 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 KPNA6O60684 536 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 ARIH2O95376 493 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 PLEKHA8P1O95397 391 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 BAG4O95429 457 aaKnown RBP14.28□□□□□ -0.12
SHMT2-214ENST00000554604 GH1P01241 217 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 PURAQ00577 322 aaKnown RBP14.28□□□□□ -0.12
SHMT2-214ENST00000554604 ANKRD1Q15327 319 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 LY6KQ17RY6 165 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 SKOR2Q2VWA4 1001 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-214ENST00000554604 GPR153Q6NV75 609 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 CCDC62Q6P9F0 684 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 BLOC1S2Q6QNY1 142 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 MICU3Q86XE3 530 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 RAB11FIP4Q86YS3 637 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 SLC43A3Q8NBI5 491 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 PDCD2LQ9BRP1 358 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 MTG1Q9BT17 334 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-214ENST00000554604 PPP1R12CQ9BZL4 782 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 MRVI1Q9Y6F6 885 aa14.28□□□□□ -0.12
SHMT2-214ENST00000554604 TRIP12Q14669 1992 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-214ENST00000554604 GRIN2DO15399 1336 aa14.27□□□□□ -0.12
SHMT2-214ENST00000554604 CD4P01730 458 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 RPS6KB1P23443 525 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 CCND2P30279 289 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 CHMP4BP1P59074 171 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 FGD1P98174 961 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 PGM5Q15124 567 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 FAM47CQ5HY64 1035 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 C9orf50Q5SZB4 431 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 MFSD5Q6N075 450 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 DHX32Q7L7V1 743 aaKnown RBP14.27□□□□□ -0.13
SHMT2-214ENST00000554604 SGMS1Q86VZ5 419 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 CMTR1Q8N1G2 835 aaKnown RBP14.27□□□□□ -0.13
SHMT2-214ENST00000554604 CCDC82Q8N4S0 544 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 TMEM199Q8N511 208 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 SRBD1Q8N5C6 995 aaKnown RBP14.27□□□□□ -0.13
SHMT2-214ENST00000554604 FANCBQ8NB91 859 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 CUL5Q93034 780 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 TCEANC2Q96MN5 208 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 ZDHHC9Q9Y397 364 aa14.27□□□□□ -0.13
SHMT2-214ENST00000554604 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-214ENST00000554604 BRD1O95696 1058 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 HMGB1P09429 215 aaKnown RBP14.26□□□□□ -0.13
SHMT2-214ENST00000554604 PPIGQ13427 754 aaKnown RBP eCLIP14.26□□□□□ -0.133e-10■□□□□ 10.6
SHMT2-214ENST00000554604 KCNV1Q6PIU1 500 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 APOA5Q6Q788 366 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 VSIG10LQ86VR7 867 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 DEFB123Q8N688 67 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 SMARCC2Q8TAQ2 1214 aa14.26□□□□□ -0.13
SHMT2-214ENST00000554604 AFG1LQ8WV93 481 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms