RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 LCORLQ8N3X6 602 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 CCDC82Q8N4S0 544 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 ZSCAN31Q96LW9 406 aaPredicted RBP5.9□□□□□ -1.46
VTI1B-202ENST00000553619 ZDHHC15Q96MV8 337 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 IPO9Q96P70 1041 aaKnown RBP5.9□□□□□ -1.46
VTI1B-202ENST00000553619 MTA3Q9BTC8 594 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 LACRTQ9GZZ8 138 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 ALDH8A1Q9H2A2 487 aaPredicted RBP5.9□□□□□ -1.46
VTI1B-202ENST00000553619 DHX36Q9H2U1 1008 aaKnown RBP5.9□□□□□ -1.46
VTI1B-202ENST00000553619 PDRG1Q9NUG6 133 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 USP40Q9NVE5 1235 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 ABI2Q9NYB9 513 aaPredicted RBP5.9□□□□□ -1.46
VTI1B-202ENST00000553619 ARPP21Q9UBL0 812 aaPredicted RBP5.9□□□□□ -1.46
VTI1B-202ENST00000553619 ANAPC4Q9UJX5 808 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 PPME1Q9Y570 386 aa5.9□□□□□ -1.46
VTI1B-202ENST00000553619 GAKO14976 1311 aa5.9□□□□□ -1.47
VTI1B-202ENST00000553619 KIAA1551Q9HCM1 1747 aa5.9□□□□□ -1.47
VTI1B-202ENST00000553619 SNED1Q8TER0 1413 aa5.9□□□□□ -1.47
VTI1B-202ENST00000553619 ERICH2A1L162 156 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 MINDY4BA8MYZ0 360 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 E7EWF7 191 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 LINC01387J3KSC0 135 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 ZBTB39O15060 712 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 HLA-DOAP06340 250 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 HSP90AA1P07900 732 aaKnown RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 CYP21A2P08686 494 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 CASTP20810 708 aaKnown RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 MCM5P33992 734 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 TNNI2P48788 182 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 PPARAQ07869 468 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 SART3Q15020 963 aaKnown RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 CFAP100Q494V2 611 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 AKNAD1Q5T1N1 836 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 VPS53Q5VIR6 699 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 FAM117BQ6P1L5 589 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 ZNF438Q7Z4V0 828 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 NCAPG2Q86XI2 1143 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 FOXP4Q8IVH2 680 aaPredicted RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 ZNF444Q8N0Y2 327 aaPredicted RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 CERS5Q8N5B7 392 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 TGFBRAP1Q8WUH2 860 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 JAKMIP1Q96N16 626 aaKnown RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 KRTAP4-12Q9BQ66 201 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 IL25Q9H293 177 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 RASSF4Q9H2L5 321 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 DCP1AQ9NPI6 582 aaPredicted RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 KCNQ5Q9NR82 932 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 MCM9Q9NXL9 1143 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 DAGLAQ9Y4D2 1042 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 PSME4Q14997 1843 aa5.89□□□□□ -1.47
VTI1B-202ENST00000553619 DICER1Q9UPY3 1922 aaKnown RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 COL1A1P02452 1464 aaPredicted RBP5.89□□□□□ -1.47
VTI1B-202ENST00000553619 MAST2Q6P0Q8 1798 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 TM4SF5O14894 197 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 PRKAB2O43741 272 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 ENTPD3O75355 529 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 CHGBP05060 677 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 PDIA4P13667 645 aaKnown RBP5.88□□□□□ -1.47
VTI1B-202ENST00000553619 RPS6KB1P23443 525 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 CDC25BP30305 580 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 TNFAIP1Q13829 316 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 C12orf60Q5U649 245 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 FKBP1CQ5VVH2 108 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 CEP135Q66GS9 1140 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 PDE12Q6L8Q7 609 aaKnown RBP5.88□□□□□ -1.47
VTI1B-202ENST00000553619 ALKBH2Q6NS38 261 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 CTR9Q6PD62 1173 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SYNE3Q6ZMZ3 975 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 ADGRA1Q86SQ6 560 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SLC51AQ86UW1 340 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 GPC2Q8N158 579 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 HELQQ8TDG4 1101 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SH3RF3Q8TEJ3 882 aaPredicted RBP5.88□□□□□ -1.47
VTI1B-202ENST00000553619 ZNF384Q8TF68 577 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SDR42E1Q8WUS8 393 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 STAG1Q8WVM7 1258 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 ESR2Q92731 530 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 HOOK2Q96ED9 719 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 TMEM87BQ96K49 555 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 UBL7Q96S82 380 aaPredicted RBP5.88□□□□□ -1.47
VTI1B-202ENST00000553619 GMLQ99445 158 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 KIF2CQ99661 725 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 IDI2Q9BXS1 227 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 MKNK2Q9HBH9 465 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SH2B1Q9NRF2 756 aaPredicted RBP5.88□□□□□ -1.47
VTI1B-202ENST00000553619 TOMM22Q9NS69 142 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 KCNK4Q9NYG8 393 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SWAP70Q9UH65 585 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 CNOT7Q9UIV1 285 aaKnown RBP5.88□□□□□ -1.47
VTI1B-202ENST00000553619 LIMCH1Q9UPQ0 1083 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 WDR19Q8NEZ3 1342 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 SBF1O95248 1867 aa5.88□□□□□ -1.47
VTI1B-202ENST00000553619 ORC4O43929 436 aa5.87□□□□□ -1.47
VTI1B-202ENST00000553619 KIF4AO95239 1232 aa5.87□□□□□ -1.47
VTI1B-202ENST00000553619 FGRP09769 529 aa5.87□□□□□ -1.47
VTI1B-202ENST00000553619 SSTR4P31391 388 aa5.87□□□□□ -1.47
VTI1B-202ENST00000553619 RHBDL3P58872 404 aa5.87□□□□□ -1.47
VTI1B-202ENST00000553619 ZNF280AP59817 542 aaPredicted RBP5.87□□□□□ -1.47
VTI1B-202ENST00000553619 HAND2P61296 217 aa5.87□□□□□ -1.47
VTI1B-202ENST00000553619 APOBEC3HQ6NTF7 200 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms