RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PPP2R3AQ06190 1150 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 STK3Q13188 491 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 BRD3Q15059 726 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 ZRSR1Q15695 479 aaKnown RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 WDR78Q5VTH9 848 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 TTBK2Q6IQ55 1244 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 MMS22LQ6ZRQ5 1243 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 CCAR1Q8IX12 1150 aaKnown RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 MB21D2Q8IYB1 491 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 ENAHQ8N8S7 591 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 GTF3C2Q8WUA4 911 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 KIFC2Q96AC6 838 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SLF1Q9BQI6 1058 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 GPHNQ9NQX3 736 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 IFNKQ9P0W0 207 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 ZNF214Q9UL59 606 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SYNPO2Q9UMS6 1093 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 A0A0G2JMZ2 1700 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 MAP2K7O14733 419 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ZSCAN12O43309 604 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 EIF3JO75822 258 aaKnown RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 CPP00450 1065 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 PRR29P0C7W0 189 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 TOP1P11387 765 aaKnown RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ERCC3P19447 782 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 CYP2B6P20813 491 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 GRK4P32298 578 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 SNAP25P60880 206 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 MTFR1Q15390 333 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 RSRC2Q7L4I2 434 aaKnown RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 IQCA1Q86XH1 822 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 EFCAB13Q8IY85 973 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 PRPF38AQ8NAV1 312 aaKnown RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 GOLGA1Q92805 767 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 GMCL1Q96IK5 515 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ZNF333Q96JL9 665 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ZSCAN10Q96SZ4 725 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 KRT23Q9C075 422 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ZSCAN16Q9H4T2 348 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 CXorf56Q9H5V9 222 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 SENP2Q9HC62 589 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 RIPK3Q9Y572 518 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 TNKSO95271 1327 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 FRMPD2Q68DX3 1309 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ADCY3O60266 1144 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 PDHBP11177 359 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 MAPK4P31152 587 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 SLC16A2P36021 539 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 PRMT2P55345 433 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 GSCP56915 257 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ANTXR2P58335 489 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 APOBRQ0VD83 1088 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 RESTQ13127 1097 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 E2F4Q16254 413 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 MORN1Q5T089 497 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 FOXR1Q6PIV2 292 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 PLEKHH3Q7Z736 793 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 DGKHQ86XP1 1220 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 CPXCR1Q8N123 301 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 MB21D1Q8N884 522 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 USP6NLQ92738 828 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 ARMC5Q96C12 935 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 CEP89Q96ST8 783 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 CNNM2Q9H8M5 875 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 PDE11AQ9HCR9 933 aa8.61□□□□□ -1.03
LIMA1-216ENST00000552909 A0A087WWV3 80 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 POTEFA5A3E0 1075 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 H3BQV1 296 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 FANCGO15287 622 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 GOLGA8HP0CJ92 632 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 TXLNAP40222 546 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 STAT3P40763 770 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 STAT2P52630 851 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 CCNA1P78396 465 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 TRIM32Q13049 653 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 IRF5Q13568 498 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 SEC23AQ15436 765 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 CCL14Q16627 93 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 FCHSD1Q86WN1 690 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 NCAPG2Q86XI2 1143 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 CPVLQ9H3G5 476 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 SLC38A10Q9HBR0 1119 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 RAVER2Q9HCJ3 691 aaKnown RBP8.6□□□□□ -1.03
LIMA1-216ENST00000552909 GPCPD1Q9NPB8 672 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 DONSONQ9NYP3 566 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 FEM1BQ9UK73 627 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 MRFAP1Q9Y605 127 aa8.6□□□□□ -1.03
LIMA1-216ENST00000552909 ZNFX1Q9P2E3 1918 aaKnown RBP8.6□□□□□ -1.03
LIMA1-216ENST00000552909 KIF1CO43896 1103 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 SNHG28P0DPA3 235 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 TAL1P17542 331 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 PTPREP23469 700 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 FAM160A1Q05DH4 1040 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 IKQ13123 557 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 CCDC96Q2M329 555 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 HDXQ7Z353 690 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 MSL3Q8N5Y2 521 aaKnown RBP8.59□□□□□ -1.03
LIMA1-216ENST00000552909 PNMA1Q8ND90 353 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 TRIB2Q92519 343 aa8.59□□□□□ -1.03
LIMA1-216ENST00000552909 ANKS1AQ92625 1134 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms