RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TRIML1Q8N9V2 468 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 SLC44A5Q8NCS7 719 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 GMCL1P1Q8NEA9 526 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 FAM151AQ8WW52 585 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 GTPBP4Q9BZE4 634 aaKnown RBP7.05□□□□□ -1.28
SYNE1-239ENST00000545694 TAOK3Q9H2K8 898 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 SH2D4AQ9H788 454 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 CABP5Q9NP86 173 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 KCNJ14Q9UNX9 436 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 ADAMTSL1Q8N6G6 1762 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 PNMA6FA0A0J9YX94 578 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 YDJCA8MPS7 323 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 SMTNL1A8MU46 457 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 GOLGA6L6A8MZA4 724 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 RNF225M0QZC1 329 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 M0R2N6 131 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 PSMD14O00487 310 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 DTNBO60941 627 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 AKR1B1P15121 316 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 PFKFB1P16118 471 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 HOXA7P31268 230 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 LONP1P36776 959 aaKnown RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 TXLNAP40222 546 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 NDUFA8P51970 172 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 TPM4P67936 248 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 ATP2C1P98194 919 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 ZNF543Q08ER8 600 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 NPY5RQ15761 445 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 TTC38Q5R3I4 469 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 CIAPIN1Q6FI81 312 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 ZSCAN29Q8IWY8 852 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 DPF2Q92785 391 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 HOOK2Q96ED9 719 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 MTMR8Q96EF0 704 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 GMCL1Q96IK5 515 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 FTOQ9C0B1 505 aaKnown RBP eCLIP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 GOLPH3LQ9H4A5 285 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 GJB4Q9NTQ9 266 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 CCDC39Q9UFE4 941 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 FBXO2Q9UK22 296 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-239ENST00000545694 KCNH3Q9ULD8 1083 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 MRVI1Q9Y6F6 885 aa7.04□□□□□ -1.28
SYNE1-239ENST00000545694 A0A1B0GVL5 298 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 GOLGA6L19H0YKK7 550 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 STXBP3O00186 592 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 SLC26A4O43511 780 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CYTH3O43739 400 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 PLA2G6O60733 806 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 SMC2O95347 1197 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 MYL1P05976 194 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 MARCKSP29966 332 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-239ENST00000545694 ZNF165P49910 485 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 MRPL12P52815 198 aaKnown RBP7.03□□□□□ -1.28
SYNE1-239ENST00000545694 NAPAP54920 295 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 NLRP12P59046 1061 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 MAP3K10Q02779 954 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 NFIAQ12857 509 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 GAS6Q14393 721 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CAMK4Q16566 473 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 ABCB5Q2M3G0 1257 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 SHC4Q6S5L8 630 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 SARM1Q6SZW1 724 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 KRBA2Q6ZNG9 492 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CKAP2LQ8IYA6 745 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CMTR1Q8N1G2 835 aaKnown RBP7.03□□□□□ -1.28
SYNE1-239ENST00000545694 FAM43AQ8N2R8 423 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 STAG2Q8N3U4 1231 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CNNM3Q8NE01 707 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 ZBED3Q96IU2 234 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-239ENST00000545694 AK8Q96MA6 479 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CSRNP1Q96S65 589 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 MXD3Q9BW11 206 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 PANK2Q9BZ23 570 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CUEDC2Q9H467 287 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 MAGEF1Q9HAY2 307 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 ARHGEF10LQ9HCE6 1279 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 KCNQ5Q9NR82 932 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 ZNF70Q9UC06 446 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-239ENST00000545694 CLIP2Q9UDT6 1046 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 TUBE1Q9UJT0 475 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 PNMA2Q9UL42 364 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 PCDHB6Q9Y5E3 794 aa7.03□□□□□ -1.28
SYNE1-239ENST00000545694 SMCO2A6NFE2 343 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 DDTLA6NHG4 134 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 USP17L5A8MUK1 530 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 BECN2A8MW95 431 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 MEN1O00255 615 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 MPHOSPH10O00566 681 aaKnown RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 IKBKBO14920 756 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ZBTB5O15062 677 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 SLFN14P0C7P3 912 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 GCFC2P16383 781 aaKnown RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ADCY7P51828 1080 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 EIF6P56537 245 aaKnown RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ZNF280AP59817 542 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ICA1Q05084 483 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 NONOQ15233 471 aaKnown RBP eCLIP7.02□□□□□ -1.29
SYNE1-239ENST00000545694 SLC4A8Q2Y0W8 1093 aa7.02□□□□□ -1.29
SYNE1-239ENST00000545694 ANO6Q4KMQ2 910 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms