RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 PPP2R5BQ15173 497 aa18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 TRIM71Q2Q1W2 868 aaKnown RBP18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 FRMD5Q7Z6J6 570 aa18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 RPAP2Q8IXW5 612 aaPredicted RBP18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 ADSSL1Q8N142 457 aa18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 GMCL1P1Q8NEA9 526 aa18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 MSLNLQ96KJ4 702 aa18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 ZBED9Q6R2W3 1325 aa18.37■□□□□ 0.53
CLSTN3-216ENST00000545663 GALR2O43603 387 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 ARIH2O95376 493 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 FDX1P10109 184 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 STAT2P52630 851 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 ZNF200P98182 395 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 ADAM15Q13444 863 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 CBX2Q14781 532 aaPredicted RBP18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 ATG2AQ2TAZ0 1938 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 SESTD1Q86VW0 696 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 TRMT2AQ8IZ69 625 aaKnown RBP18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 RAD50Q92878 1312 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 INCENPQ9NQS7 918 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 MTMR4Q9NYA4 1195 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 HDAC6Q9UBN7 1215 aa18.36■□□□□ 0.53
CLSTN3-216ENST00000545663 PRDM1O75626 825 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 TXNP10599 105 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 AFG1LQ8WV93 481 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 STAG1Q8WVM7 1258 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 DDRGK1Q96HY6 314 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 OSBPL7Q9BZF2 842 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 IL1RAPL2Q9NP60 686 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 CLEC1BQ9P126 229 aa18.35■□□□□ 0.53
CLSTN3-216ENST00000545663 MICAL3Q7RTP6 2002 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 EYA4O95677 639 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 CTNNB1P35222 781 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 RRP1P56182 461 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 PDE4BQ07343 736 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 KCTD1Q719H9 257 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 RASGRP2Q7LDG7 609 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 TOP1MTQ969P6 601 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 RPGRIP1Q96KN7 1286 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 ADD3Q9UEY8 706 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 GTF2IRD1Q9UHL9 959 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 CCPG1Q9ULG6 757 aa18.34■□□□□ 0.53
CLSTN3-216ENST00000545663 MYH4Q9Y623 1939 aa18.33■□□□□ 0.53
CLSTN3-216ENST00000545663 TPRP12270 2363 aaKnown RBP18.33■□□□□ 0.53
CLSTN3-216ENST00000545663 CHD6Q8TD26 2715 aa18.33■□□□□ 0.53
CLSTN3-216ENST00000545663 MINDY4BA8MYZ0 360 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 NFIBO00712 420 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 NKRFO15226 690 aaKnown RBP eCLIP18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 MCCP23508 829 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 NDUFV1P49821 464 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 HIC1Q14526 733 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 SLC30A10Q6XR72 485 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 FAM160B2Q86V87 743 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 SCFD2Q8WU76 684 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 CHURC1Q8WUH1 139 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 RMDN1Q96DB5 314 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 CNTNAP3BQ96NU0 1288 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 CNTNAP3Q9BZ76 1288 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 PRR12Q9ULL5 1215 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 EXOC6BQ9Y2D4 811 aa18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 EP300Q09472 2414 aaPredicted RBP18.33■□□□□ 0.52
CLSTN3-216ENST00000545663 TTLL1O95922 423 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 MMP3P08254 477 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 LINC00271P0C7V0 271 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 PDE4DQ08499 809 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 PTK7Q13308 1070 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 C7orf31Q8N865 590 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 NKD2Q969F2 451 aaPredicted RBP18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 ALG1Q9BT22 464 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 PUS7LQ9H0K6 701 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 BCL11AQ9H165 835 aa18.32■□□□□ 0.52
CLSTN3-216ENST00000545663 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 PTPDC1A2A3K4 754 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 CT47B1P0C2W7 299 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 CALML3P27482 149 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 BMPR1AP36894 532 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 CAMK1Q14012 370 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 PLEKHG4Q58EX7 1191 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 CHST3Q7LGC8 479 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 TMEM57Q8N5G2 664 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 TMEM105Q8N8V8 129 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 SMRP1Q8NCR6 262 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 RIPOR3Q96MK2 946 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 ARPP21Q9UBL0 812 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 USP15Q9Y4E8 981 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 NLRC5Q86WI3 1866 aa18.31■□□□□ 0.52
CLSTN3-216ENST00000545663 C5orf67F2Z3F1 127 aa18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 SLC1A4P43007 532 aa18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 ADGRD2Q7Z7M1 963 aa18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 ZNF444Q8N0Y2 327 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 FRAT1Q92837 279 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 GMCL1Q96IK5 515 aa18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 IFIH1Q9BYX4 1025 aaKnown RBP18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 PAG1Q9NWQ8 432 aa18.3■□□□□ 0.52
CLSTN3-216ENST00000545663 RSPH10B2B2RC85 870 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 RSPH10BP0C881 870 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 ICAM3P32942 547 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 PSEN2P49810 448 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 NUBP1P53384 320 aa18.29■□□□□ 0.52
CLSTN3-216ENST00000545663 ARHGAP1Q07960 439 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms