RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 VSIG10LQ86VR7 867 aa13.61□□□□□ -0.23
HDAC4-216ENST00000544989 TDHQ8IZJ6 230 aa13.61□□□□□ -0.23
HDAC4-216ENST00000544989 SLC43A3Q8NBI5 491 aa13.61□□□□□ -0.23
HDAC4-216ENST00000544989 SMARCC2Q8TAQ2 1214 aa13.61□□□□□ -0.23
HDAC4-216ENST00000544989 PSTPIP2Q9H939 334 aa13.61□□□□□ -0.23
HDAC4-216ENST00000544989 MRVI1Q9Y6F6 885 aa13.61□□□□□ -0.23
HDAC4-216ENST00000544989 DDX49Q9Y6V7 483 aaKnown RBP13.61□□□□□ -0.23
HDAC4-216ENST00000544989 KLF18A0A0U1RQI7 1052 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 RAG1P15918 1043 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 RXRAP19793 462 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 RPS6KB1P23443 525 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 METAP2P50579 478 aaKnown RBP eCLIP13.6□□□□□ -0.23
HDAC4-216ENST00000544989 MDM2Q00987 491 aaPredicted RBP13.6□□□□□ -0.23
HDAC4-216ENST00000544989 ITGA7Q13683 1181 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 LAMC2Q13753 1193 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 PGM5Q15124 567 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 PPP1R18Q6NYC8 613 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 CCDC62Q6P9F0 684 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 CXCL17Q6UXB2 119 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 FCHSD1Q86WN1 690 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 PIBF1Q8WXW3 757 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 EMID1Q96A84 441 aaPredicted RBP13.6□□□□□ -0.23
HDAC4-216ENST00000544989 MTG1Q9BT17 334 aaPredicted RBP13.6□□□□□ -0.23
HDAC4-216ENST00000544989 USP26Q9BXU7 913 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 EHMT1Q9H9B1 1298 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 FRMPD4Q14CM0 1322 aa13.6□□□□□ -0.23
HDAC4-216ENST00000544989 SUPT20HL2P0C7V6 817 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 MYCLP12524 364 aaPredicted RBP13.59□□□□□ -0.23
HDAC4-216ENST00000544989 CASTP20810 708 aaKnown RBP13.59□□□□□ -0.23
HDAC4-216ENST00000544989 PURAQ00577 322 aaKnown RBP13.59□□□□□ -0.23
HDAC4-216ENST00000544989 FAAP100Q0VG06 881 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 Q6ZUG5 572 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 TCEANC2Q96MN5 208 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 AGXT2Q9BYV1 514 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 TM6SF1Q9BZW5 370 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 DDX41Q9UJV9 622 aaKnown RBP13.59□□□□□ -0.23
HDAC4-216ENST00000544989 BRPF3Q9ULD4 1205 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 NAP1L2Q9ULW6 460 aaPredicted RBP13.59□□□□□ -0.23
HDAC4-216ENST00000544989 CYP46A1Q9Y6A2 500 aa13.59□□□□□ -0.23
HDAC4-216ENST00000544989 TRIM43BA6NCK2 446 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 TIMP1P01033 207 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 MYL3P08590 195 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 PTPN11Q06124 597 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-216ENST00000544989 COL9A3Q14050 684 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-216ENST00000544989 DGKDQ16760 1214 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 LY6KQ17RY6 165 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 LRIT3Q3SXY7 679 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 NFRKBQ6P4R8 1299 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 RUFY3Q7L099 469 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 HEATR3Q7Z4Q2 680 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 FAM126BQ8IXS8 530 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 CCDC82Q8N4S0 544 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 PPTC7Q8NI37 304 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 CCDC12Q8WUD4 166 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-216ENST00000544989 BRF1Q92994 677 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 TRIM43Q96BQ3 446 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-216ENST00000544989 LRCH3Q96II8 777 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 CDHR1Q96JP9 859 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 TBX21Q9UL17 535 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 CNTNAP5Q8WYK1 1306 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 NID2Q14112 1375 aa13.58□□□□□ -0.24
HDAC4-216ENST00000544989 SPDYE3A6NKU9 549 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 MEIS2O14770 477 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 ARIH2O95376 493 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 FOSP01100 380 aaPredicted RBP13.57□□□□□ -0.24
HDAC4-216ENST00000544989 IRX5P78411 483 aaPredicted RBP13.57□□□□□ -0.24
HDAC4-216ENST00000544989 AKAP17AQ02040 695 aaKnown RBP13.57□□□□□ -0.24
HDAC4-216ENST00000544989 ARHGAP1Q07960 439 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 NEDD9Q14511 834 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 PCNX4Q63HM2 1172 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 RAB11FIP4Q86YS3 637 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 DHX37Q8IY37 1157 aaKnown RBP13.57□□□□□ -0.24
HDAC4-216ENST00000544989 CMTR1Q8N1G2 835 aaKnown RBP13.57□□□□□ -0.24
HDAC4-216ENST00000544989 BADQ92934 168 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 KATNAL1Q9BW62 490 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 ZSWIM6Q9HCJ5 1215 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 STXBP5LQ9Y2K9 1186 aa13.57□□□□□ -0.24
HDAC4-216ENST00000544989 KIAA1217Q5T5P2 1943 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 FIBPO43427 364 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 CD4P01730 458 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 MMP3P08254 477 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 ICAM3P32942 547 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 NAPAP54920 295 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 EVCP57679 992 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 ANAPC15P60006 121 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 FPGSQ05932 587 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 APOBRQ0VD83 1088 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 FUT2Q10981 343 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 PPIGQ13427 754 aaKnown RBP eCLIP13.56□□□□□ -0.244e-9■■□□□ 13.8
HDAC4-216ENST00000544989 CELF3Q5SZQ8 465 aaKnown RBP13.56□□□□□ -0.24
HDAC4-216ENST00000544989 TMEM63BQ5T3F8 832 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 MCTP2Q6DN12 878 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 USP17L6PQ6QN14 398 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 SH3RF1Q7Z6J0 888 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 NLRX1Q86UT6 975 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 TMEM199Q8N511 208 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 GIMAP8Q8ND71 665 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-216ENST00000544989 AFG1LQ8WV93 481 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 COPS5Q92905 334 aa13.56□□□□□ -0.24
HDAC4-216ENST00000544989 INPP4AQ96PE3 977 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms