RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 C12orf42Q96LP6 360 aa16.08■□□□□ 0.16
VPS33A-209ENST00000544349 MMTAG2Q9BU76 263 aaKnown RBP16.08■□□□□ 0.16
VPS33A-209ENST00000544349 RAB34Q9BZG1 259 aa16.08■□□□□ 0.16
VPS33A-209ENST00000544349 C19orf81C9J6K1 198 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 ADM5C9JUS6 153 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 GCOM1H8Y6P7 765 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-209ENST00000544349 GTPBP6O43824 516 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-209ENST00000544349 FLOT1O75955 427 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 POLR2MP0CAP2 368 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 PRKCSHP14314 528 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-209ENST00000544349 GPR162Q16538 588 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 AGBL1Q96MI9 1066 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 GSDMAQ96QA5 445 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 CCDC94Q9BW85 323 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-209ENST00000544349 LRWD1Q9UFC0 647 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 CCPG1Q9ULG6 757 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 PPP1R9AQ9ULJ8 1098 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 ZNF18P17022 549 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 CIITAP33076 1130 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 USP50Q70EL3 339 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-209ENST00000544349 FCHSD1Q86WN1 690 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 PLIN2Q99541 437 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 SLC38A10Q9HBR0 1119 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 KCNMB3Q9NPA1 279 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 NFE2L3Q9Y4A8 694 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 PARP14Q460N5 1801 aa16.07■□□□□ 0.16
VPS33A-209ENST00000544349 CBFA2T2O43439 604 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 MARCH6O60337 910 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 CYP3A4P08684 503 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 PLCG1P19174 1290 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 Q4G0T1 1027 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 PDCL2Q8N4E4 241 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 MLKLQ8NB16 471 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 LRRC15Q8TF66 581 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 BLZF1Q9H2G9 400 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 CUEDC2Q9H467 287 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 POTEMA6NI47 508 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 EPHX2P34913 555 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 HMGCS2P54868 508 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 MAP3K9P80192 1104 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 CUL4BQ13620 913 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.06■□□□□ 0.16
VPS33A-209ENST00000544349 KRT26Q7Z3Y9 468 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 CALML4Q96GE6 196 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 KBTBD4Q9NVX7 518 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 PCDHA12Q9UN75 941 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 AFG3L2Q9Y4W6 797 aa16.06■□□□□ 0.16
VPS33A-209ENST00000544349 FAM86B1E9PN63 330 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 FAM86B2P0C5J1 330 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 FDX1P10109 184 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 KCNJ6P48051 423 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 TMEM139Q8IV31 216 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 CPXCR1Q8N123 301 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 GJA10Q969M2 543 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 MAGEF1Q9HAY2 307 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 RAVER2Q9HCJ3 691 aaKnown RBP16.05■□□□□ 0.16
VPS33A-209ENST00000544349 SAMSN1Q9NSI8 373 aaKnown RBP16.05■□□□□ 0.16
VPS33A-209ENST00000544349 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS33A-209ENST00000544349 DACH1Q9UI36 760 aa16.05■□□□□ 0.16
VPS33A-209ENST00000544349 ZNF215Q9UL58 517 aaPredicted RBP16.05■□□□□ 0.16
VPS33A-209ENST00000544349 V9GYY5 206 aaPredicted RBP16.05■□□□□ 0.16
VPS33A-209ENST00000544349 ZC3H4Q9UPT8 1303 aaKnown RBP16.04■□□□□ 0.16
VPS33A-209ENST00000544349 GLTPD2A6NH11 291 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 TBX3O15119 743 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 PPP1R12BO60237 982 aaPredicted RBP16.04■□□□□ 0.16
VPS33A-209ENST00000544349 CD44P16070 742 aaKnown RBP16.04■□□□□ 0.16
VPS33A-209ENST00000544349 GRB10Q13322 594 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 GLIPR1L2Q4G1C9 344 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 PRR16Q569H4 304 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 SLFN12Q8IYM2 578 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 ZC3H15Q8WU90 426 aaKnown RBP16.04■□□□□ 0.16
VPS33A-209ENST00000544349 LENG9Q96B70 501 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 SNCAIPQ9Y6H5 919 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 RLFQ13129 1914 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 ZBED4O75132 1171 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 MYL1P05976 194 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 VGLL4Q14135 290 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 SMYD4Q8IYR2 804 aaPredicted RBP16.04■□□□□ 0.16
VPS33A-209ENST00000544349 ETNPPLQ8TBG4 499 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 CLEC4DQ8WXI8 215 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 TMX1Q9H3N1 280 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 PAPPA2Q9BXP8 1791 aa16.04■□□□□ 0.16
VPS33A-209ENST00000544349 VWA5AO00534 786 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 GRIN3BO60391 1043 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 ZNF76P36508 570 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 HSD17B4P51659 736 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 TBX2Q13207 712 aaPredicted RBP16.03■□□□□ 0.16
VPS33A-209ENST00000544349 KRT79Q5XKE5 535 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 ENOX1Q8TC92 643 aaKnown RBP16.03■□□□□ 0.16
VPS33A-209ENST00000544349 ATG4CQ96DT6 458 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 PNMA5Q96PV4 448 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 NUDT12Q9BQG2 462 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 EHMT1Q9H9B1 1298 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 PNMA2Q9UL42 364 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 CTDP1Q9Y5B0 961 aaPredicted RBP16.03■□□□□ 0.16
VPS33A-209ENST00000544349 NFIBO00712 420 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 FANCGO15287 622 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 RPN1P04843 607 aaKnown RBP16.03■□□□□ 0.16
VPS33A-209ENST00000544349 ALAS1P13196 640 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 GHRHRQ02643 423 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms