RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 NLRX1Q86UT6 975 aa13.89□□□□□ -0.19
DDX55-210ENST00000543016 CRYGNQ8WXF5 182 aa13.89□□□□□ -0.19
DDX55-210ENST00000543016 MCOLN1Q9GZU1 580 aa13.89□□□□□ -0.19
DDX55-210ENST00000543016 HMX1Q9NP08 348 aaPredicted RBP13.89□□□□□ -0.19
DDX55-210ENST00000543016 GJB4Q9NTQ9 266 aa13.89□□□□□ -0.19
DDX55-210ENST00000543016 TMEM260Q9NX78 707 aa13.89□□□□□ -0.19
DDX55-210ENST00000543016 ZSWIM8A7E2V4 1837 aa13.89□□□□□ -0.19
DDX55-210ENST00000543016 RBM47A0AV96 593 aaKnown RBP13.88□□□□□ -0.19
DDX55-210ENST00000543016 BTBD18B2RXH4 712 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 MYCLP12524 364 aaPredicted RBP13.88□□□□□ -0.19
DDX55-210ENST00000543016 CYBAP13498 195 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 PRKAR2AP13861 404 aaKnown RBP13.88□□□□□ -0.19
DDX55-210ENST00000543016 GCFC2P16383 781 aaKnown RBP13.88□□□□□ -0.19
DDX55-210ENST00000543016 CIITAP33076 1130 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 TRAPPC10P48553 1259 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 CACNB2Q08289 660 aaPredicted RBP13.88□□□□□ -0.19
DDX55-210ENST00000543016 SCFD2Q8WU76 684 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 TNFRSF25Q93038 417 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 GPRASP2Q96D09 838 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 INPP4AQ96PE3 977 aaPredicted RBP13.88□□□□□ -0.19
DDX55-210ENST00000543016 KATNBL1Q9H079 304 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 FAM184BQ9ULE4 1060 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 PLXNA1Q9UIW2 1896 aa13.88□□□□□ -0.19
DDX55-210ENST00000543016 NKRFO15226 690 aaKnown RBP eCLIP13.87□□□□□ -0.19
DDX55-210ENST00000543016 SEPT4O43236 478 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 DTNBO60941 627 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 ZNF865P0CJ78 1059 aaPredicted RBP13.87□□□□□ -0.19
DDX55-210ENST00000543016 AKR1A1P14550 325 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 SYT1P21579 422 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 ICAM3P32942 547 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 ZNF76P36508 570 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 GUCY1B3Q02153 619 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 ORC2Q13416 577 aaPredicted RBP13.87□□□□□ -0.19
DDX55-210ENST00000543016 TTLL4Q14679 1199 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 CEP55Q53EZ4 464 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 NEK8Q86SG6 692 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 NOSTRINQ8IVI9 506 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 RASGRP4Q8TDF6 673 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 OXER1Q8TDS5 423 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 TBCKQ8TEA7 893 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 ZNF333Q96JL9 665 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 ZHX1Q9UKY1 873 aaPredicted RBP13.87□□□□□ -0.19
DDX55-210ENST00000543016 Q9Y3F1 56 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 UBIAD1Q9Y5Z9 338 aa13.87□□□□□ -0.19
DDX55-210ENST00000543016 CYP3A7-CYP3A51PA0A087WV96 503 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 MEIS1O00470 390 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 FIBPO43427 364 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 STX6O43752 255 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 CYP3A7P24462 503 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 FOSBP53539 338 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 MRPS9P82933 396 aaKnown RBP13.86□□□□□ -0.19
DDX55-210ENST00000543016 SETQ01105 290 aaPredicted RBP13.86□□□□□ -0.19
DDX55-210ENST00000543016 NR5A1Q13285 461 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 PPP4R3AQ6IN85 833 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 TAPT1Q6NXT6 567 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 PIK3AP1Q6ZUJ8 805 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 BRAPQ7Z569 592 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 GIMAP8Q8ND71 665 aaPredicted RBP13.86□□□□□ -0.19
DDX55-210ENST00000543016 SH3TC2Q8TF17 1288 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 SENP7Q9BQF6 1050 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 MXRA8Q9BRK3 442 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 ZSCAN16Q9H4T2 348 aaPredicted RBP13.86□□□□□ -0.19
DDX55-210ENST00000543016 JADE2Q9NQC1 790 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 TSHZ2Q9NRE2 1034 aa13.86□□□□□ -0.19
DDX55-210ENST00000543016 NOL7Q9UMY1 257 aaKnown RBP13.86□□□□□ -0.19
DDX55-210ENST00000543016 SPATA31C2B4DYI2 1134 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 INF2Q27J81 1249 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 CCDC144BQ3MJ40 725 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 DUSP28Q4G0W2 176 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 RILPL1Q5EBL4 403 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 MCTP1Q6DN14 999 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 FBXO16Q8IX29 292 aaPredicted RBP13.85□□□□□ -0.19
DDX55-210ENST00000543016 IL31RAQ8NI17 732 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 PGBD1Q96JS3 809 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 MBOAT7Q96N66 472 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 WDR11Q9BZH6 1224 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 RBM19Q9Y4C8 960 aaKnown RBP13.85□□□□□ -0.19
DDX55-210ENST00000543016 LCTP09848 1927 aa13.85□□□□□ -0.19
DDX55-210ENST00000543016 VPS37CA5D8V6 355 aaPredicted RBP13.84□□□□□ -0.19
DDX55-210ENST00000543016 ADAMTS3O15072 1205 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 DUSP11O75319 330 aaKnown RBP13.84□□□□□ -0.19
DDX55-210ENST00000543016 RARBP10826 455 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 CCL5P13501 91 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 ITGB5P18084 799 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 TNFAIP2Q03169 654 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 TRIM32Q13049 653 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 MKRN4PQ13434 485 aaPredicted RBP13.84□□□□□ -0.19
DDX55-210ENST00000543016 MTMR1Q13613 665 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 NEDD9Q14511 834 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 Q4G0T1 1027 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 PRAMEF19Q5SWL8 479 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 CCDC62Q6P9F0 684 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 SEPT14Q6ZU15 432 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 EEPD1Q7L9B9 569 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 TRPV1Q8NER1 839 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.84□□□□□ -0.19
DDX55-210ENST00000543016 SPC25Q9HBM1 224 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 PAK6Q9NQU5 681 aaPredicted RBP13.84□□□□□ -0.19
DDX55-210ENST00000543016 DDX20Q9UHI6 824 aaKnown RBP13.84□□□□□ -0.19
DDX55-210ENST00000543016 MTMR6Q9Y217 621 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms