RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 MYSM1Q5VVJ2 828 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 KRT25Q7Z3Z0 450 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 BRAPQ7Z569 592 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 PLEKHH3Q7Z736 793 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 SAMD3Q8N6K7 520 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 TBCKQ8TEA7 893 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 CFHR5Q9BXR6 569 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 FTOQ9C0B1 505 aaKnown RBP eCLIP10.66□□□□□ -0.7
DDX55-208ENST00000541259 MAP3K20Q9NYL2 800 aaKnown RBP10.66□□□□□ -0.7
DDX55-208ENST00000541259 TFIP11Q9UBB9 837 aaKnown RBP10.66□□□□□ -0.7
DDX55-208ENST00000541259 TSKSQ9UJT2 592 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 LRRC37A2A6NM11 1700 aa10.66□□□□□ -0.7
DDX55-208ENST00000541259 ZNF236Q9UL36 1845 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 PFASO15067 1338 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 RPTORQ8N122 1335 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 DNAJC25-GNG10A0A024R161 153 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 SOWAHBA6NEL2 793 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 COBLO75128 1261 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 FOSP01100 380 aaPredicted RBP10.65□□□□□ -0.7
DDX55-208ENST00000541259 EIF2AK2P19525 551 aaKnown RBP10.65□□□□□ -0.7
DDX55-208ENST00000541259 ADORA2AP29274 412 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 SP3Q02447 781 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 DNM1Q05193 864 aaKnown RBP10.65□□□□□ -0.7
DDX55-208ENST00000541259 AP3B2Q13367 1082 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 KCTD2Q14681 263 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 FAM133AQ8N9E0 248 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 IL31RAQ8NI17 732 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 CRYGNQ8WXF5 182 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 FGD4Q96M96 766 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 RMDN3Q96TC7 470 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 PXMP2Q9NR77 195 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 PCDHB6Q9Y5E3 794 aa10.65□□□□□ -0.7
DDX55-208ENST00000541259 SLC15A5A6NIM6 579 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 GPR25O00155 361 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 STRNO43815 780 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 SREBF1P36956 1147 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 PSMC4P43686 418 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 LACTBP83111 547 aaPredicted RBP10.64□□□□□ -0.71
DDX55-208ENST00000541259 ARHGAP4P98171 946 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 MAP2K1Q02750 393 aaPredicted RBP10.64□□□□□ -0.71
DDX55-208ENST00000541259 CEBPZQ03701 1054 aaKnown RBP10.64□□□□□ -0.71
DDX55-208ENST00000541259 GRB14Q14449 540 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 ZNF174Q15697 407 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 LETM2Q2VYF4 491 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 ZNF792Q3KQV3 632 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 TTC38Q5R3I4 469 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 MORN1Q5T089 497 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 ABRAQ8N0Z2 381 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 TRIM47Q96LD4 638 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 USP28Q96RU2 1077 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 MAF1Q9H063 256 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 WBP1LQ9NX94 342 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 SAGE1Q9NXZ1 904 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 GJD2Q9UKL4 321 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 CLIC4Q9Y696 253 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 IVNS1ABPQ9Y6Y0 642 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 WDR81Q562E7 1941 aa10.64□□□□□ -0.71
DDX55-208ENST00000541259 FRMPD4Q14CM0 1322 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 TNPO2O14787 897 aaKnown RBP10.63□□□□□ -0.71
DDX55-208ENST00000541259 SLC34A2O95436 690 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 TDP2O95551 362 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 MYCLP12524 364 aaPredicted RBP10.63□□□□□ -0.71
DDX55-208ENST00000541259 ALDH5A1P51649 535 aaPredicted RBP10.63□□□□□ -0.71
DDX55-208ENST00000541259 MRPS9P82933 396 aaKnown RBP10.63□□□□□ -0.71
DDX55-208ENST00000541259 PGM5Q15124 567 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 ARHGEF16Q5VV41 709 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 MCTP2Q6DN12 878 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 NEK8Q86SG6 692 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 TEX2Q8IWB9 1127 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 NPLOC4Q8TAT6 608 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 CYP2W1Q8TAV3 490 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 CD99L2Q8TCZ2 262 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 PTCD2Q8WV60 388 aaKnown RBP10.63□□□□□ -0.71
DDX55-208ENST00000541259 USP6NLQ92738 828 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 UIMC1Q96RL1 719 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 PDCD2LQ9BRP1 358 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 RTEL1Q9NZ71 1219 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 NOL7Q9UMY1 257 aaKnown RBP10.63□□□□□ -0.71
DDX55-208ENST00000541259 GABRQQ9UN88 632 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 CNPY2Q9Y2B0 182 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 MRVI1Q9Y6F6 885 aa10.63□□□□□ -0.71
DDX55-208ENST00000541259 CCNT1O60563 726 aaKnown RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 BAG4O95429 457 aaKnown RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 NR3C2P08235 984 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 CYP3A4P08684 503 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 NCLP19338 710 aaKnown RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 CYP2B6P20813 491 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 MCM7P33993 719 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 USP11P51784 963 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 FCGRTP55899 365 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 MAP2K5Q13163 448 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 SF3A1Q15459 793 aaKnown RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 RILPL1Q5EBL4 403 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 ANO1Q5XXA6 986 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 DPP9Q86TI2 863 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 DNERQ8NFT8 737 aa10.62□□□□□ -0.71
DDX55-208ENST00000541259 NSUN6Q8TEA1 469 aaKnown RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 ZNF296Q8WUU4 475 aaPredicted RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 ZNF396Q96N95 335 aaPredicted RBP10.62□□□□□ -0.71
DDX55-208ENST00000541259 BEGAINQ9BUH8 593 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms