RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 LONRF2Q1L5Z9 754 aa9.26□□□□□ -0.93
YBX3-210ENST00000540975 MROH9Q5TGP6 573 aa9.26□□□□□ -0.93
YBX3-210ENST00000540975 KCNT2Q6UVM3 1135 aa9.26□□□□□ -0.93
YBX3-210ENST00000540975 CDC6Q99741 560 aa9.26□□□□□ -0.93
YBX3-210ENST00000540975 PHF20Q9BVI0 1012 aa9.26□□□□□ -0.93
YBX3-210ENST00000540975 IRAK3Q9Y616 596 aa9.26□□□□□ -0.93
YBX3-210ENST00000540975 TRBV23-1A0A0A0MS06 115 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 IRS4O14654 1257 aaPredicted RBP9.25□□□□□ -0.93
YBX3-210ENST00000540975 FBLN1P23142 703 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 SSPNQ14714 243 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 TARBP2Q15633 366 aaKnown RBP9.25□□□□□ -0.93
YBX3-210ENST00000540975 IPO9Q96P70 1041 aaKnown RBP9.25□□□□□ -0.93
YBX3-210ENST00000540975 CDIP1Q9H305 208 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 BCAS3Q9H6U6 928 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 CLDND1Q9NY35 253 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 CDK11AQ9UQ88 783 aaPredicted RBP9.25□□□□□ -0.93
YBX3-210ENST00000540975 KCTD3Q9Y597 815 aa9.25□□□□□ -0.93
YBX3-210ENST00000540975 SGSM2O43147 1006 aa9.24□□□□□ -0.93
YBX3-210ENST00000540975 BUB1BO60566 1050 aaPredicted RBP9.24□□□□□ -0.93
YBX3-210ENST00000540975 JAG1P78504 1218 aa9.24□□□□□ -0.93
YBX3-210ENST00000540975 DCP2Q8IU60 420 aaKnown RBP9.24□□□□□ -0.93
YBX3-210ENST00000540975 TMEFF1Q8IYR6 380 aa9.24□□□□□ -0.93
YBX3-210ENST00000540975 ALG3Q92685 438 aa9.24□□□□□ -0.93
YBX3-210ENST00000540975 ASGR2P07307 311 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 NCAM1P13591 858 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 ATF2P15336 505 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 IGFBP6P24592 240 aaPredicted RBP9.23□□□□□ -0.93
YBX3-210ENST00000540975 SLC6A11P48066 632 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 ZNF385BQ569K4 471 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 STYK1Q6J9G0 422 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 LBX2Q6XYB7 198 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 LRRC56Q8IYG6 542 aaPredicted RBP9.23□□□□□ -0.93
YBX3-210ENST00000540975 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 PANK1Q8TE04 598 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 DHRS4Q9BTZ2 278 aa9.23□□□□□ -0.93
YBX3-210ENST00000540975 EPB41L4AQ9HCS5 686 aaPredicted RBP9.23□□□□□ -0.93
YBX3-210ENST00000540975 COA3Q9Y2R0 106 aaPredicted RBP9.23□□□□□ -0.93
YBX3-210ENST00000540975 ASXL2Q76L83 1435 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 PFKLP17858 780 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 CIAPIN1Q6FI81 312 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 DPH6Q7L8W6 267 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 C1QL4Q86Z23 238 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 IFNL3Q8IZI9 196 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 LILRB2Q8N423 598 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 SEC14L1Q92503 715 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 EXOC2Q96KP1 924 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 ZFYVE21Q9BQ24 234 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 LNPKQ9C0E8 428 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 RNF38Q9H0F5 515 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 AP5M1Q9H0R1 490 aa9.22□□□□□ -0.93
YBX3-210ENST00000540975 PMLP29590 882 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 GPR85P60893 370 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 FZD5Q13467 585 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 NFE2L2Q16236 605 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 ZC3H12BQ5HYM0 836 aaKnown RBP9.21□□□□□ -0.94
YBX3-210ENST00000540975 LCE3BQ5TA77 95 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 MILR1Q7Z6M3 343 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 KISS1RQ969F8 398 aaPredicted RBP9.21□□□□□ -0.94
YBX3-210ENST00000540975 JAM3Q9BX67 310 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 IRF2BPLQ9H1B7 796 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 ZSWIM4Q9H7M6 989 aa9.21□□□□□ -0.94
YBX3-210ENST00000540975 NUAK1O60285 661 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 PI3P19957 117 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 SUMO1P63165 101 aaKnown RBP9.2□□□□□ -0.94
YBX3-210ENST00000540975 BMS1Q14692 1282 aaKnown RBP9.2□□□□□ -0.94
YBX3-210ENST00000540975 CCDC144BQ3MJ40 725 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 FAM129CQ86XR2 697 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 ZSCAN18Q8TBC5 510 aaPredicted RBP9.2□□□□□ -0.94
YBX3-210ENST00000540975 PTPRN2Q92932 1015 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 PPARGC1AQ9UBK2 798 aaKnown RBP9.2□□□□□ -0.94
YBX3-210ENST00000540975 PALD1Q9ULE6 856 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 TRAF6Q9Y4K3 522 aa9.2□□□□□ -0.94
YBX3-210ENST00000540975 HGSO14964 777 aaPredicted RBP9.19□□□□□ -0.94
YBX3-210ENST00000540975 C6orf222P0C671 652 aaPredicted RBP9.19□□□□□ -0.94
YBX3-210ENST00000540975 FOXO4P98177 505 aa9.19□□□□□ -0.94
YBX3-210ENST00000540975 CNKSR3Q6P9H4 555 aa9.19□□□□□ -0.94
YBX3-210ENST00000540975 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.19□□□□□ -0.94
YBX3-210ENST00000540975 THAP3Q8WTV1 239 aaPredicted RBP9.19□□□□□ -0.94
YBX3-210ENST00000540975 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.19□□□□□ -0.94
YBX3-210ENST00000540975 CPA5Q8WXQ8 436 aa9.19□□□□□ -0.94
YBX3-210ENST00000540975 EPB41L1Q9H4G0 881 aa9.19□□□□□ -0.94
YBX3-210ENST00000540975 MRPS23Q9Y3D9 190 aaKnown RBP9.19□□□□□ -0.94
YBX3-210ENST00000540975 RFXAPO00287 272 aa9.18□□□□□ -0.94
YBX3-210ENST00000540975 TADA3O75528 432 aa9.18□□□□□ -0.94
YBX3-210ENST00000540975 DGKIO75912 1065 aa9.18□□□□□ -0.94
YBX3-210ENST00000540975 MC3RP41968 323 aa9.18□□□□□ -0.94
YBX3-210ENST00000540975 KIZQ2M2Z5 673 aa9.18□□□□□ -0.94
YBX3-210ENST00000540975 AMIGO3Q86WK7 504 aa9.18□□□□□ -0.94
YBX3-210ENST00000540975 DACT3Q96B18 629 aaPredicted RBP9.18□□□□□ -0.94
YBX3-210ENST00000540975 LIMS1P48059 325 aa9.17□□□□□ -0.94
YBX3-210ENST00000540975 CACNB2Q08289 660 aaPredicted RBP9.17□□□□□ -0.94
YBX3-210ENST00000540975 CHRNA2Q15822 529 aa9.17□□□□□ -0.94
YBX3-210ENST00000540975 STEAP3Q658P3 488 aa9.17□□□□□ -0.94
YBX3-210ENST00000540975 MAMDC2Q7Z304 686 aaPredicted RBP9.17□□□□□ -0.94
YBX3-210ENST00000540975 B3GNT8Q7Z7M8 397 aa9.17□□□□□ -0.94
YBX3-210ENST00000540975 MRFAP1L1Q96HT8 127 aa9.17□□□□□ -0.94
YBX3-210ENST00000540975 GABREP78334 506 aa9.16□□□□□ -0.94
YBX3-210ENST00000540975 KRTAP19-4Q3LI73 84 aa9.16□□□□□ -0.94
YBX3-210ENST00000540975 EMC4Q5J8M3 183 aa9.16□□□□□ -0.94
YBX3-210ENST00000540975 KRTAP1-3Q8IUG1 177 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms