RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 COL20A1Q9P218 1284 aa19.98■□□□□ 0.79
CLSTN3-210ENST00000540931 ZSWIM8A7E2V4 1837 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 SEPT4O43236 478 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 SNAI1O95863 264 aaPredicted RBP19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 CACNB2Q08289 660 aaPredicted RBP19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 UBE2SQ16763 222 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 JAKMIP3Q5VZ66 844 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 MOXD1Q6UVY6 613 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 NIPA1Q7RTP0 329 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 DIS3L2Q8IYB7 885 aaKnown RBP19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 GIMAP8Q8ND71 665 aaPredicted RBP19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 AIFM3Q96NN9 605 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 FLRT1Q9NZU1 646 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 KCNJ14Q9UNX9 436 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 Q9Y3F1 56 aa19.97■□□□□ 0.79
CLSTN3-210ENST00000540931 M0R2N6 131 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 CYBAP13498 195 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 GCFC2P16383 781 aaKnown RBP19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 CYP2C19P33261 490 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 ZNF76P36508 570 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 SETQ01105 290 aaPredicted RBP19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 TTLL4Q14679 1199 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 GPRASP2Q96D09 838 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 SPC25Q9HBM1 224 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 CEP290O15078 2479 aa19.96■□□□□ 0.79
CLSTN3-210ENST00000540931 RBM47A0AV96 593 aaKnown RBP19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 MYCLP12524 364 aaPredicted RBP19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 TRAPPC10P48553 1259 aa19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 ARHGAP4P98171 946 aa19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 ORC2Q13416 577 aaPredicted RBP19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 ZHX1Q9UKY1 873 aaPredicted RBP19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 NOL7Q9UMY1 257 aaKnown RBP19.95■□□□□ 0.78
CLSTN3-210ENST00000540931 FIBPO43427 364 aa19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 U2AF2P26368 475 aaKnown RBP eCLIP19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 CIITAP33076 1130 aa19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 NPY5RQ15761 445 aa19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 CEP55Q53EZ4 464 aa19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 BRDTQ58F21 947 aaPredicted RBP19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 SH3TC2Q8TF17 1288 aa19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 INPP4AQ96PE3 977 aaPredicted RBP19.94■□□□□ 0.78
CLSTN3-210ENST00000540931 ZNF865P0CJ78 1059 aaPredicted RBP19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 RARBP10826 455 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 CNGA1P29973 690 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 ICAM3P32942 547 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 BRAPQ7Z569 592 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 NEK8Q86SG6 692 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 NOSTRINQ8IVI9 506 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 TBCKQ8TEA7 893 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 SENP7Q9BQF6 1050 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 RNF208Q9H0X6 261 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 COLQQ9Y215 455 aaPredicted RBP19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 ASTN1O14525 1302 aa19.93■□□□□ 0.78
CLSTN3-210ENST00000540931 BTBD18B2RXH4 712 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 DUSP11O75319 330 aaKnown RBP19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 TNFAIP2Q03169 654 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 NEDD9Q14511 834 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 CCDC144BQ3MJ40 725 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 PPP4R3AQ6IN85 833 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 CRYGNQ8WXF5 182 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 PURBQ96QR8 312 aaKnown RBP19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 MXRA8Q9BRK3 442 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 ZSCAN16Q9H4T2 348 aaPredicted RBP19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 JADE2Q9NQC1 790 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 PAK6Q9NQU5 681 aaPredicted RBP19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 TMEM260Q9NX78 707 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 DDX20Q9UHI6 824 aaKnown RBP19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 UBIAD1Q9Y5Z9 338 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 MRVI1Q9Y6F6 885 aa19.92■□□□□ 0.78
CLSTN3-210ENST00000540931 CYP3A7-CYP3A51PA0A087WV96 503 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 GJB1P08034 283 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 CCL5P13501 91 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 CYP3A7P24462 503 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 MTMR1Q13613 665 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 DUSP28Q4G0W2 176 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 PIK3AP1Q6ZUJ8 805 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 ARRDC4Q8NCT1 418 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 SHISA4Q96DD7 197 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 WDR11Q9BZH6 1224 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 KATNBL1Q9H079 304 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 TCEAL9Q9UHQ7 104 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 LCTP09848 1927 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 TRIOBPQ9H2D6 2365 aa19.91■□□□□ 0.78
CLSTN3-210ENST00000540931 MEIS1O00470 390 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 STX6O43752 255 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 ZEB2O60315 1214 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 TXNP10599 105 aaKnown RBP19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 SYT1P21579 422 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 MRPS9P82933 396 aaKnown RBP19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 RILPL1Q5EBL4 403 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 MCTP1Q6DN14 999 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 TAPT1Q6NXT6 567 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 SEPT14Q6ZU15 432 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 FBXO16Q8IX29 292 aaPredicted RBP19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 TNFRSF25Q93038 417 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 AP5M1Q9H0R1 490 aa19.9■□□□□ 0.78
CLSTN3-210ENST00000540931 SPATA31C2B4DYI2 1134 aa19.89■□□□□ 0.77
CLSTN3-210ENST00000540931 GUCY1B3Q02153 619 aa19.89■□□□□ 0.77
CLSTN3-210ENST00000540931 LAMC2Q13753 1193 aa19.89■□□□□ 0.77
CLSTN3-210ENST00000540931 Q4G0T1 1027 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms