RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CCZ1BP86790 482 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CCZ1P86791 482 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-212ENST00000540304 RASSF7Q02833 373 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 GRB10Q13322 594 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 KMT5BQ4FZB7 885 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CDKAL1Q5VV42 579 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 KRT79Q5XKE5 535 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CHURC1Q8WUH1 139 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CCDC47Q96A33 483 aaKnown RBP10.81□□□□□ -0.68
CLIP1-212ENST00000540304 CDK5RAP3Q96JB5 506 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 C7orf25Q9BPX7 421 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 INTS13Q9NVM9 706 aa10.81□□□□□ -0.68
CLIP1-212ENST00000540304 SPDYE3A6NKU9 549 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 FZD9O00144 591 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PLA2G6O60733 806 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 EGFRP00533 1210 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 SFPQP23246 707 aaKnown RBP eCLIP10.8□□□□□ -0.68
CLIP1-212ENST00000540304 ARMCX5Q6P1M9 558 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 MICALL2Q8IY33 904 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 OTUD6BQ8N6M0 293 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 SNX29Q8TEQ0 813 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 CRYGNQ8WXF5 182 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 TEPSINQ96N21 525 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 MBOAT7Q96N66 472 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PNMA5Q96PV4 448 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 TRIM9Q9C026 710 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-212ENST00000540304 GDAQ9Y2T3 454 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PHF20L1A8MW92 1017 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PIK3CDO00329 1044 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PRCPP42785 496 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PTGER2P43116 358 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 ARHGAP4P98171 946 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 TPD52L1Q16890 204 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-212ENST00000540304 DNAJC14Q6Y2X3 702 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-212ENST00000540304 FAM160B2Q86V87 743 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 NELFBQ8WX92 580 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 RANBP17Q9H2T7 1088 aaKnown RBP10.8□□□□□ -0.68
CLIP1-212ENST00000540304 PCDHA12Q9UN75 941 aa10.8□□□□□ -0.68
CLIP1-212ENST00000540304 OPLAHO14841 1288 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 SREBF1P36956 1147 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 STIM1Q13586 685 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 ZYXQ15942 572 aaKnown RBP10.79□□□□□ -0.68
CLIP1-212ENST00000540304 SV2BQ7L1I2 683 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 ADSSL1Q8N142 457 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 GIMAP8Q8ND71 665 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-212ENST00000540304 CTAGE1Q96RT6 745 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 P2RX7Q99572 595 aaKnown RBP10.79□□□□□ -0.68
CLIP1-212ENST00000540304 KCNMB3Q9NPA1 279 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 BLOC1S4Q9NUP1 217 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 RSPH14Q9UHP6 348 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 GJA3Q9Y6H8 435 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 A0A1B0GTH6 734 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 NRDCO43847 1150 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 ASIC1P78348 528 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 GOLGA8FQ08AF8 430 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 GOLGA8DPQ0D2H9 430 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 TMEM119Q4V9L6 283 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 SLFN12Q8IYM2 578 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 LARP4BQ92615 738 aaKnown RBP10.79□□□□□ -0.68
CLIP1-212ENST00000540304 KIFC2Q96AC6 838 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 GLIS2Q9BZE0 524 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-212ENST00000540304 GINM1Q9NU53 330 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 EXOC1Q9NV70 894 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 CNOT7Q9UIV1 285 aaKnown RBP10.79□□□□□ -0.68
CLIP1-212ENST00000540304 FEM1BQ9UK73 627 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 SMCHD1A6NHR9 2005 aa10.79□□□□□ -0.68
CLIP1-212ENST00000540304 SLC26A4O43511 780 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 PRELPP51888 382 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 NR1I3Q14994 352 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 Q4G0T1 1027 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 APTXQ7Z2E3 356 aaKnown RBP10.78□□□□□ -0.68
CLIP1-212ENST00000540304 SAMD7Q7Z3H4 446 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 RAD54LQ92698 747 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 FEZ1Q99689 392 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 MAPK8IP1Q9UQF2 711 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 KDM3AQ9Y4C1 1321 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 PSMA7O14818 248 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 TBX3O15119 743 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 SPAG1Q07617 926 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 PDE4DQ08499 809 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 KIF4BQ2VIQ3 1234 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 TBC1D10BQ4KMP7 808 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-212ENST00000540304 SPECC1LQ69YQ0 1117 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 CCDC174Q6PII3 467 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 GJA10Q969M2 543 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 NUDT12Q9BQG2 462 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 ZNF341Q9BYN7 854 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 LRRC27Q9C0I9 530 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 HACL1Q9UJ83 578 aa10.78□□□□□ -0.68
CLIP1-212ENST00000540304 PSDA5PKW4 1024 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-212ENST00000540304 HOXA13P31271 388 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-212ENST00000540304 CIITAP33076 1130 aa10.77□□□□□ -0.68
CLIP1-212ENST00000540304 PPP1R2P41236 205 aa10.77□□□□□ -0.68
CLIP1-212ENST00000540304 TBX2Q13207 712 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-212ENST00000540304 MCM6Q14566 821 aa10.77□□□□□ -0.68
CLIP1-212ENST00000540304 FILIP1LQ4L180 1135 aa10.77□□□□□ -0.68
CLIP1-212ENST00000540304 HYIQ5T013 277 aa10.77□□□□□ -0.68
CLIP1-212ENST00000540304 CCDC84Q86UT8 332 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-212ENST00000540304 CCDC112Q8NEF3 446 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms