RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SCG5P05408 212 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 CELA3BP08861 270 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 BCL6P41182 706 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 KRTAP10-2P60368 255 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 RPL11P62913 178 aaKnown RBP5.86□□□□□ -1.47
VPS13A-213ENST00000539950 FXNQ16595 210 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 IQCEQ6IPM2 695 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 DENND5AQ6IQ26 1287 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 Q8N1Y9 231 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 RCBTB1Q8NDN9 531 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 DIO2Q92813 273 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 GORASP1Q9BQQ3 440 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 TINF2Q9BSI4 451 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 USP40Q9NVE5 1235 aa5.86□□□□□ -1.47
VPS13A-213ENST00000539950 MEFVO15553 781 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-213ENST00000539950 NOBOXO60393 691 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 GJB6O95452 261 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 LCP1P13796 627 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 KCNJ6P48051 423 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 SLC6A11P48066 632 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 GFRA1P56159 465 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 GNL2Q13823 731 aaKnown RBP5.85□□□□□ -1.47
VPS13A-213ENST00000539950 ETV3LQ6ZN32 361 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 CEP68Q76N32 757 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 PRRT2Q7Z6L0 340 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-213ENST00000539950 MILR1Q7Z6M3 343 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 FERMT3Q86UX7 667 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 MCF2L2Q86YR7 1114 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 MIB1Q86YT6 1006 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 RIOX2Q8IUF8 465 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 LINC00482Q8N8I6 264 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 SEC14L1Q92503 715 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 TRMT2BQ96GJ1 504 aaKnown RBP5.85□□□□□ -1.47
VPS13A-213ENST00000539950 BDH2Q9BUT1 245 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 NTMQ9P121 344 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 PALD1Q9ULE6 856 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 DUSP10Q9Y6W6 482 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 X6R8D5 127 aa5.85□□□□□ -1.47
VPS13A-213ENST00000539950 CAPNS1P04632 268 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 GRIA2P42262 883 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 SARSP49591 514 aaKnown RBP5.84□□□□□ -1.47
VPS13A-213ENST00000539950 RBM10P98175 930 aaKnown RBP5.84□□□□□ -1.47
VPS13A-213ENST00000539950 KCNAB2Q13303 367 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 TESK1Q15569 626 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 ZFYVE27Q5T4F4 411 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 ACBD5Q5T8D3 534 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-213ENST00000539950 MROH9Q5TGP6 573 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 CD300LDQ6UXZ3 194 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 STK32CQ86UX6 486 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 ZNF761Q86XN6 746 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-213ENST00000539950 PPIL6Q8IXY8 311 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 TMEM145Q8NBT3 493 aa5.84□□□□□ -1.47
VPS13A-213ENST00000539950 C11orf84Q9BUA3 381 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-213ENST00000539950 CPP00450 1065 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 LTBRP36941 435 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 STAT5AP42229 794 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 ARID5AQ03989 594 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 PLP2Q04941 152 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 SLC10A6Q3KNW5 377 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 ERICH6BQ5W0A0 696 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 HNRNPLLQ8WVV9 542 aaKnown RBP5.83□□□□□ -1.48
VPS13A-213ENST00000539950 DDX1Q92499 740 aaKnown RBP5.83□□□□□ -1.48
VPS13A-213ENST00000539950 C1orf159Q96HA4 380 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 TMEM169Q96HH4 297 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 CCDC140Q96MF4 163 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 PCDHA2Q9Y5H9 948 aa5.83□□□□□ -1.48
VPS13A-213ENST00000539950 MYO1BO43795 1136 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 SMARCA5O60264 1052 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-213ENST00000539950 DNAJA1P31689 397 aaKnown RBP5.82□□□□□ -1.48
VPS13A-213ENST00000539950 THBS2P35442 1172 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 GTF2A2P52657 109 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 GJA9P57773 515 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 NFKB2Q00653 900 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 UBXN11Q5T124 520 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 SLC35F1Q5T1Q4 408 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 TTLL7Q6ZT98 887 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 EEPD1Q7L9B9 569 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 FAM126BQ8IXS8 530 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 CELF2-AS1Q8N7Q2 184 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 ADAMTS17Q8TE56 1095 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 LNPKQ9C0E8 428 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 ST7Q9NRC1 585 aa5.82□□□□□ -1.48
VPS13A-213ENST00000539950 CCDC9Q9Y3X0 531 aaKnown RBP5.82□□□□□ -1.48
VPS13A-213ENST00000539950 CNR2P34972 360 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 ITGA1P56199 1179 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 PPP2R2AP63151 447 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 LSAMPQ13449 338 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 CR1LQ2VPA4 569 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 KYQ8NBH2 561 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 CHAMP1Q96JM3 812 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 KRTAP9-8Q9BYQ0 159 aa5.81□□□□□ -1.48
VPS13A-213ENST00000539950 COA3Q9Y2R0 106 aaPredicted RBP5.81□□□□□ -1.48
VPS13A-213ENST00000539950 A0A1W2PQU0 124 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 H7BY64 318 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 RPL13P26373 211 aaKnown RBP5.8□□□□□ -1.48
VPS13A-213ENST00000539950 EFEMP1Q12805 493 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 ANKS3Q6ZW76 656 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 ZC3H18Q86VM9 953 aaKnown RBP5.8□□□□□ -1.48
VPS13A-213ENST00000539950 ARRDC4Q8NCT1 418 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 EPN3Q9H201 632 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms