RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 KRT25Q7Z3Z0 450 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 ACSBG1Q96GR2 724 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 NCAPGQ9BPX3 1015 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 KLRF2D3W0D1 207 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 ADAMTS2O95450 1211 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 CRKLP46109 303 aaKnown RBP12.43□□□□□ -0.42
SYNE1-237ENST00000539504 KLHDC7AQ5VTJ3 777 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 NEK8Q86SG6 692 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 SLC44A5Q8NCS7 719 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 RUBCNQ92622 972 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 CAVIN3Q969G5 261 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 YY1AP1Q9H869 796 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 C6orf50Q9HD87 102 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 BARHL2Q9NY43 387 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 SEC63Q9UGP8 760 aaKnown RBP12.43□□□□□ -0.42
SYNE1-237ENST00000539504 STXBP3O00186 592 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 POLR2FP61218 127 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 SKOR1P84550 965 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 IFT88Q13099 833 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 SFMBT2Q5VUG0 894 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 PDXDC1Q6P996 788 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 KANSL2Q9H9L4 492 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 TSKSQ9UJT2 592 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 ZNF804BA4D1E1 1349 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 MYMKA6NI61 221 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 MEFVO15553 781 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 EPB41P11171 864 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 PRPHP41219 470 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 GLE1Q53GS7 698 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 DGKHQ86XP1 1220 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 TBCKQ8TEA7 893 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 TBC1D5Q92609 795 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 LSM14BQ9BX40 385 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 IL17RBQ9NRM6 502 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 TBC1D7Q9P0N9 293 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 MINPP1Q9UNW1 487 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 ZNF233A6NK53 670 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 CYTH3O43739 400 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 NTSR2O95665 410 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 HIBADHP31937 336 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 RDXP35241 583 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 GRM4Q14833 912 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 KIAA0753Q2KHM9 967 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 CENPPQ6IPU0 288 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 GALNT17Q6IS24 598 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 ZHX3Q9H4I2 956 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 SAP30BPQ9UHR5 308 aaKnown RBP12.42□□□□□ -0.42
SYNE1-237ENST00000539504 MAD2L2Q9UI95 211 aa12.42□□□□□ -0.42
SYNE1-237ENST00000539504 ADAMTSL3P82987 1691 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 GNA11P29992 359 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 HNRNPH3P31942 346 aaKnown RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 SEMA3FQ13275 785 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 TRADDQ15628 312 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 TMEM266Q2M3C6 531 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 ERFEQ4G0M1 354 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 CABS1Q96KC9 395 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 FLT1P17948 1338 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 UBR2Q8IWV8 1755 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 ATP2C2O75185 946 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 PPP1R37O75864 691 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 TNNC1P63316 161 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 NAA35Q5VZE5 725 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 TMED8Q6PL24 325 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 LARP4BQ92615 738 aaKnown RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 UIMC1Q96RL1 719 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 CEP89Q96ST8 783 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 EPN3Q9H201 632 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 PLAAQ9Y263 795 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 MAP2K2P36507 400 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 C3orf67Q6ZVT6 689 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 NELFCDQ8IXH7 590 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 PROCA1Q8NCQ7 364 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 SNX29Q8TEQ0 813 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 ZNF473Q8WTR7 871 aaKnown RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 CASKIN2Q8WXE0 1202 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 CELF1Q92879 486 aaKnown RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 JPH2Q9BR39 696 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-237ENST00000539504 ADAMTS1Q9UHI8 967 aa12.41□□□□□ -0.42
SYNE1-237ENST00000539504 KCNK3O14649 394 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 CAMTA2O94983 1202 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 CALCRLQ16602 461 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 KCTD19Q17RG1 926 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-237ENST00000539504 UNC13DQ70J99 1090 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 RNF10Q8N5U6 811 aaKnown RBP12.4□□□□□ -0.42
SYNE1-237ENST00000539504 DUOX1Q9NRD9 1551 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 PARP4Q9UKK3 1724 aaKnown RBP12.4□□□□□ -0.42
SYNE1-237ENST00000539504 TMCO5BA8MYB1 307 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 KLRC1P26715 233 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 CDR1P51861 262 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 KLHL30Q0D2K2 578 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 KCNV1Q6PIU1 500 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 KDM7AQ6ZMT4 941 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 ZNF572Q7Z3I7 529 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-237ENST00000539504 NLRP14Q86W24 1093 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 CCDC24Q8N4L8 307 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 BAP1Q92560 729 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 ATP6V1G3Q96LB4 118 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 CCT8L2Q96SF2 557 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 TMEM47Q9BQJ4 181 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 GEMIN8Q9NWZ8 242 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms