RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	DDX41	Q9UJV9	622 aa	Known RBP	14.18	□□□□□ -0.14
CLTCL1-205	ENST00000538828	DDX49	Q9Y6V7	483 aa	Known RBP	14.18	□□□□□ -0.14
CLTCL1-205	ENST00000538828	LTBP2	Q14767	1821 aa		14.18	□□□□□ -0.14
CLTCL1-205	ENST00000538828	GOLGA8A	A7E2F4	631 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	GOLGA8B	A8MQT2	603 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SLC34A2	O95436	690 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	CD4	P01730	458 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	HOXD8	P13378	290 aa	Predicted RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SYN1	P17600	705 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	RXRA	P19793	462 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	CAST	P20810	708 aa	Known RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	HOXA13	P31271	388 aa	Predicted RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	BEX3	Q00994	111 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	PTPN11	Q06124	597 aa	Predicted RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	FAAP100	Q0VG06	881 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	ITGA7	Q13683	1181 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	LAMC2	Q13753	1193 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	LRIT3	Q3SXY7	679 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	MCTP2	Q6DN12	878 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	CXCL17	Q6UXB2	119 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	FAM126B	Q8IXS8	530 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TDH	Q8IZJ6	230 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	FAM177A1	Q8N128	213 aa	Predicted RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	INPP4A	Q96PE3	977 aa	Predicted RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	MTG1	Q9BT17	334 aa	Predicted RBP	14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TBX21	Q9UL17	535 aa		14.17	□□□□□ -0.14
CLTCL1-205	ENST00000538828	MAFG	O15525	162 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	RGS20	O76081	388 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	ARIH2	O95376	493 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	FOS	P01100	380 aa	Predicted RBP	14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	METAP2	P50579	478 aa	Known RBP eCLIP	14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	FXR1	P51114	621 aa	Known RBP eCLIP	14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	ARHGAP1	Q07960	439 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	PCNX4	Q63HM2	1172 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	NFRKB	Q6P4R8	1299 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SEPT14	Q6ZU15	432 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	PPTC7	Q8NI37	304 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SMARCC2	Q8TAQ2	1214 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	BRF1	Q92994	677 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	VTI1A	Q96AJ9	217 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TCEANC2	Q96MN5	208 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SENP7	Q9BQF6	1050 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	BARHL2	Q9NY43	387 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	CYP46A1	Q9Y6A2	500 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	MRVI1	Q9Y6F6	885 aa		14.16	□□□□□ -0.14
CLTCL1-205	ENST00000538828	ESYT2	A0FGR8	921 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TRIM43B	A6NCK2	446 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	PQBP1	O60828	265 aa	Known RBP	14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	PPFIA4	O75335	1185 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SUPT20HL2	P0C7V6	817 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	CDC27	P30260	824 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	IRX5	P78411	483 aa	Predicted RBP	14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TMEM63B	Q5T3F8	832 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	SESTD1	Q86VW0	696 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	FCHSD1	Q86WN1	690 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TRIM43	Q96BQ3	446 aa	Predicted RBP	14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	ZNF274	Q96GC6	653 aa	Predicted RBP	14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	CDHR1	Q96JP9	859 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	RNF26	Q9BY78	433 aa	Predicted RBP	14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	UBE2O	Q9C0C9	1292 aa	Known RBP	14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	EHMT1	Q9H9B1	1298 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	TMEM39A	Q9NV64	488 aa		14.15	□□□□□ -0.14
CLTCL1-205	ENST00000538828	GRIN2D	O15399	1336 aa		14.15	□□□□□ -0.15
CLTCL1-205	ENST00000538828	PRPF3	O43395	683 aa	Known RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	FIBP	O43427	364 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	TIMP1	P01033	207 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	RAG1	P15918	1043 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	IFNAR1	P17181	557 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	MRPS9	P82933	396 aa	Known RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	AP3B2	Q13367	1082 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	NEDD9	Q14511	834 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	DGKD	Q16760	1214 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	PFKFB3	Q16875	520 aa	Predicted RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	LY6K	Q17RY6	165 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	CELF3	Q5SZQ8	465 aa	Known RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	MYSM1	Q5VVJ2	828 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	USP17L6P	Q6QN14	398 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	GIMAP8	Q8ND71	665 aa	Predicted RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	CCDC12	Q8WUD4	166 aa	Predicted RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	RIC8A	Q9NPQ8	531 aa		14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828		V9GY48	417 aa	Predicted RBP	14.14	□□□□□ -0.15
CLTCL1-205	ENST00000538828	MYH7B	A7E2Y1	1941 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	SPDYE3	A6NKU9	549 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	SPATA31C2	B4DYI2	1134 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	MMP3	P08254	477 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	MYCL	P12524	364 aa	Predicted RBP	14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	PDIA3	P30101	505 aa	Known RBP	14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	ADD1	P35611	737 aa	Known RBP	14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	APOBR	Q0VD83	1088 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	NTRK3	Q16288	839 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	WWC2	Q6AWC2	1192 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	MFSD5	Q6N075	450 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	SH3RF1	Q7Z6J0	888 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	NLRX1	Q86UT6	975 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	DHX37	Q8IY37	1157 aa	Known RBP	14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	CMTR1	Q8N1G2	835 aa	Known RBP	14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	CCDC82	Q8N4S0	544 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	IL31RA	Q8NI17	732 aa		14.13	□□□□□ -0.15
CLTCL1-205	ENST00000538828	PIBF1	Q8WXW3	757 aa		14.13	□□□□□ -0.15

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