RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ARAFP10398 606 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 FDPSP14324 419 aaKnown RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 PRPHP41219 470 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 RWDD2BP57060 319 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 ADCY2Q08462 1091 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 KCNMA1Q12791 1236 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 PTPAQ15257 358 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 HIF1AQ16665 826 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 CCDC38Q502W7 563 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 CDKAL1Q5VV42 579 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 FBXW10Q5XX13 1052 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 POTEAQ6S8J7 498 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 C6orf89Q6UWU4 347 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 RAD9BQ6WBX8 426 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 C14orf37Q86TY3 774 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 BEND7Q8N7W2 519 aaPredicted RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 KBTBD3Q8NAB2 608 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.47□□□□□ -1.21
USP28-207ENST00000538475 WASF1Q92558 559 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 EAF2Q96CJ1 260 aaPredicted RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 SGSM3Q96HU1 749 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 RSRC1Q96IZ7 334 aaKnown RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 HSH2DQ96JZ2 352 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 SUSD3Q96L08 255 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 SELENOOQ9BVL4 669 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 TEX13AQ9BXU3 409 aaPredicted RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 KRTAP4-6Q9BYQ5 205 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 TSGA10Q9BZW7 698 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 TMX4Q9H1E5 349 aaPredicted RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 RRAGCQ9HB90 399 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 SPATS2LQ9NUQ6 558 aaKnown RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 ADD3Q9UEY8 706 aaKnown RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 LIMA1Q9UHB6 759 aaKnown RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 CEP131Q9UPN4 1083 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 PCDHA5Q9Y5H7 936 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 UBN2Q6ZU65 1347 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 STK36Q9NRP7 1315 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 SLIT3O75094 1523 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 MARF1Q9Y4F3 1742 aaKnown RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 ABCC12Q96J65 1359 aa7.46□□□□□ -1.21
USP28-207ENST00000538475 NWD1Q149M9 1564 aa7.46□□□□□ -1.21
USP28-207ENST00000538475 LAMB4A4D0S4 1761 aa7.46□□□□□ -1.21
USP28-207ENST00000538475 ZNF609O15014 1411 aa7.46□□□□□ -1.21
USP28-207ENST00000538475 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 PI4KAP2A4QPH2 592 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 KRT86O43790 486 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 PHACTR2O75167 634 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 BMP15O95972 392 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 FAM107AO95990 144 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 GSTA1P08263 222 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 ADH6P28332 368 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 IRS1P35568 1242 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 ADKP55263 362 aaKnown RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 CDK17Q00537 523 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 TRAF1Q13077 416 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 POSTNQ15063 836 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 HSP90AB2PQ58FF8 381 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 TLDC1Q6P9B6 456 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 SHC4Q6S5L8 630 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 APTXQ7Z2E3 356 aaKnown RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 ZNF589Q86UQ0 364 aaPredicted RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 METTL16Q86W50 562 aaKnown RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 CCDC170Q8IYT3 715 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 PI4KAP1Q8N8J0 262 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 RETREG2Q8NC44 543 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 NOA1Q8NC60 698 aaKnown RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 C7orf43Q8WVR3 580 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 N4BP2L2Q92802 583 aaPredicted RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 GSDMAQ96QA5 445 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 SIL1Q9H173 461 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 LZTFL1Q9NQ48 299 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 STRN4Q9NRL3 753 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 MAN1B1Q9UKM7 699 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 EPN1Q9Y6I3 576 aaPredicted RBP7.46□□□□□ -1.22
USP28-207ENST00000538475 BCL9LQ86UU0 1499 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 LTN1O94822 1766 aa7.46□□□□□ -1.22
USP28-207ENST00000538475 ATAD5Q96QE3 1844 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 MYH1P12882 1939 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 A0A1W2PQC6 194 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 SOWAHDA6NJG2 315 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 PHF20L1A8MW92 1017 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 E7EWF7 191 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 GRM8O00222 908 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 ABLIM1O14639 778 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 CPLX1O14810 134 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 EFSO43281 561 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 DNAJC8O75937 253 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 ZFYP08048 801 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 TCP1P17987 556 aaKnown RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 FBLN1P23142 703 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 CYLC1P35663 651 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 EIF4A1P60842 406 aaKnown RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 AKAP17AQ02040 695 aaKnown RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 RBL2Q08999 1139 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 XRCC4Q13426 336 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 PPP2R5AQ15172 486 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 RBBP5Q15291 538 aaKnown RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 PDCD2Q16342 344 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 IMMTQ16891 758 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms