RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 AMNQ9BXJ7 453 aa9.85□□□□□ -0.83
USP28-203ENST00000537490 SENP2Q9HC62 589 aa9.85□□□□□ -0.83
USP28-203ENST00000537490 PXMP2Q9NR77 195 aa9.85□□□□□ -0.83
USP28-203ENST00000537490 PCDHA11Q9Y5I1 949 aa9.85□□□□□ -0.83
USP28-203ENST00000537490 TAF6LQ9Y6J9 622 aa9.85□□□□□ -0.83
USP28-203ENST00000537490 PITPNM1O00562 1244 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 ZBTB5O15062 677 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 CASTP20810 708 aaKnown RBP9.84□□□□□ -0.83
USP28-203ENST00000537490 CHMLP26374 656 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 GHRHRQ02643 423 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 BFSP2Q13515 415 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 GPNMBQ14956 572 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 PTGISQ16647 500 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 GDF6Q6KF10 455 aaPredicted RBP9.84□□□□□ -0.83
USP28-203ENST00000537490 SESTD1Q86VW0 696 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 PDCD2LQ9BRP1 358 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 FTOQ9C0B1 505 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP28-203ENST00000537490 NOD1Q9Y239 953 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 PCDHA1Q9Y5I3 950 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 SCN10AQ9Y5Y9 1956 aa9.84□□□□□ -0.83
USP28-203ENST00000537490 RFXAPO00287 272 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 IFIT3O14879 490 aaKnown RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 CYTH3O43739 400 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 RGS20O76081 388 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 MYCLP12524 364 aaPredicted RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 ACTN1P12814 892 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 HOXA13P31271 388 aaPredicted RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 RFC2P35250 354 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 PSEN2P49810 448 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 IRX6P78412 446 aaPredicted RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 TRDNQ13061 729 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 LAMC2Q13753 1193 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 GRM4Q14833 912 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 DGKDQ16760 1214 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 TMEM67Q5HYA8 995 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 TJAP1Q5JTD0 557 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 PPP2R2DQ66LE6 453 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 STOX1Q6ZVD7 989 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 VSIG10LQ86VR7 867 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 HOMER1Q86YM7 354 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 DHX37Q8IY37 1157 aaKnown RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 IL31RAQ8NI17 732 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 RUFY2Q8WXA3 655 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 DHX38Q92620 1227 aaKnown RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 SYMPKQ92797 1274 aaKnown RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 EMID1Q96A84 441 aaPredicted RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 ZFP91Q96JP5 570 aaPredicted RBP9.83□□□□□ -0.84
USP28-203ENST00000537490 PIGSQ96S52 555 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 ALG1Q9BT22 464 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 RIOX1Q9H6W3 641 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 HDAC6Q9UBN7 1215 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 MRVI1Q9Y6F6 885 aa9.83□□□□□ -0.84
USP28-203ENST00000537490 MYO9BQ13459 2157 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 LAMA4Q16363 1823 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 E7EWF7 191 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 HAS3O00219 553 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 SORBS3O60504 671 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 ARHGEF15O94989 841 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 CA3P07451 260 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 ZNF286BP0CG31 522 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 ZNF200P98182 395 aaPredicted RBP9.82□□□□□ -0.84
USP28-203ENST00000537490 SP2Q02086 613 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 TROAPQ12815 778 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 MFSD10Q14728 455 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 PGM5Q15124 567 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 MYSM1Q5VVJ2 828 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 SAMD3Q8N6K7 520 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 CAGE1Q8TC20 777 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 PHOSPHO2Q8TCD6 241 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 GPKOWQ92917 476 aaPredicted RBP eCLIP9.82□□□□□ -0.84
USP28-203ENST00000537490 SLC9A7Q96T83 725 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 CERS4Q9HA82 394 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 MAP3K20Q9NYL2 800 aaKnown RBP9.82□□□□□ -0.84
USP28-203ENST00000537490 GTF2IRD1Q9UHL9 959 aa9.82□□□□□ -0.84
USP28-203ENST00000537490 EPOPA6NHQ4 379 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 GCOM1H8Y6P7 765 aaPredicted RBP9.81□□□□□ -0.84
USP28-203ENST00000537490 SGSM2O43147 1006 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 NBNO60934 754 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 F2P00734 622 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 POLR2MP0CAP2 368 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 ATXN8OSP0DMR3 200 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 CKBP12277 381 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 HOXD8P13378 290 aaPredicted RBP9.81□□□□□ -0.84
USP28-203ENST00000537490 SELPP16109 830 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 ANTXR2P58335 489 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 RBL2Q08999 1139 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 HIC1Q14526 733 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 WTAPQ15007 396 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 KIAA0753Q2KHM9 967 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 TCTN1Q2MV58 587 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 TRIM71Q2Q1W2 868 aaKnown RBP9.81□□□□□ -0.84
USP28-203ENST00000537490 HSDL1Q3SXM5 330 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 CELF3Q5SZQ8 465 aaKnown RBP9.81□□□□□ -0.84
USP28-203ENST00000537490 LRRC8DQ7L1W4 858 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 FCHSD1Q86WN1 690 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 HERC6Q8IVU3 1022 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 C7orf31Q8N865 590 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 NCOA7Q8NI08 942 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 PPTC7Q8NI37 304 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 IGDCC4Q8TDY8 1250 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms