RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 MMP1P03956 469 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 CCDC73Q6ZRK6 1079 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 FAM133AQ8N9E0 248 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 ANKLE1Q8NAG6 615 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 GOLPH3LQ9H4A5 285 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 MAD2L2Q9UI95 211 aa13.62□□□□□ -0.23
CLIP1-208ENST00000537004 ZHX1Q9UKY1 873 aaPredicted RBP13.62□□□□□ -0.23
CLIP1-208ENST00000537004 SPTLC2O15270 562 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 CCDC192P0DO97 292 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 FUT2Q10981 343 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 BAATQ14032 418 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 SF3A1Q15459 793 aaKnown RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 SLC35G1Q2M3R5 365 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 TKFCQ3LXA3 575 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 ASPRV1Q53RT3 343 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 ADALQ6DHV7 355 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 MAMDC4Q6UXC1 1216 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 RBM43Q6ZSC3 357 aaKnown RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 ARMCX2Q7L311 632 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 CLEC4DQ8WXI8 215 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 C11orf49Q9H6J7 331 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 MSCO60682 206 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 PLEKHA8P1O95397 391 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 PGK1P00558 417 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 IRX5P78411 483 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 AKAP17AQ02040 695 aaKnown RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 FAM160A1Q05DH4 1040 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 SAFBQ15424 915 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 CDC37Q16543 378 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 CKAP2LQ8IYA6 745 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 FSIP1Q8NA03 581 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 HTATIP2Q9BUP3 242 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 JMJD4Q9H9V9 463 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-208ENST00000537004 KCNJ14Q9UNX9 436 aa13.61□□□□□ -0.23
CLIP1-208ENST00000537004 SYNGAP1Q96PV0 1343 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 A0A1W2PQ27 194 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 A0A1W2PQ64 194 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 A0A1W2PQD8 194 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 KLRF2D3W0D1 207 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 ADCY6O43306 1168 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 PRPF3O43395 683 aaKnown RBP13.6□□□□□ -0.23
CLIP1-208ENST00000537004 COL6A1P12109 1028 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 PTGS1P23219 599 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 SNW1Q13573 536 aaKnown RBP13.6□□□□□ -0.23
CLIP1-208ENST00000537004 QRICH1Q2TAL8 776 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 SLC30A10Q6XR72 485 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 TMTC3Q6ZXV5 915 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 EEPD1Q7L9B9 569 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 NOSTRINQ8IVI9 506 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 CTCFLQ8NI51 663 aaPredicted RBP13.6□□□□□ -0.23
CLIP1-208ENST00000537004 MRPS27Q92552 414 aaKnown RBP13.6□□□□□ -0.23
CLIP1-208ENST00000537004 TBC1D5Q92609 795 aa13.6□□□□□ -0.23
CLIP1-208ENST00000537004 SENP6Q9GZR1 1112 aaPredicted RBP13.6□□□□□ -0.23
CLIP1-208ENST00000537004 BTBD18B2RXH4 712 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 CALML3P27482 149 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 ACVR2BQ13705 512 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 SLC39A14Q15043 492 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 PKN1Q16512 942 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 UVSSAQ2YD98 709 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 ZNF467Q7Z7K2 595 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 DIS3L2Q8IYB7 885 aaKnown RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 ENGASEQ8NFI3 743 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 TRIM44Q96DX7 344 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 PDLIM2Q96JY6 352 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 FOXP1Q9H334 677 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 PALM3A6NDB9 673 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 EVI5O60447 810 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 ATN1P54259 1190 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 RPS6P62753 249 aaKnown RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 TYRO3Q06418 890 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 LRRC41Q15345 812 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 MAP3K14Q99558 947 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 KATNBL1Q9H079 304 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 XPNPEP3Q9NQH7 507 aa13.59□□□□□ -0.23
CLIP1-208ENST00000537004 V9GY48 417 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-208ENST00000537004 CNTNAP5Q8WYK1 1306 aa13.58□□□□□ -0.23
CLIP1-208ENST00000537004 TRIOBPQ9H2D6 2365 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 CYTH3O43739 400 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 KINO60870 393 aaKnown RBP13.58□□□□□ -0.24
CLIP1-208ENST00000537004 PPP1R11O60927 126 aaPredicted RBP13.58□□□□□ -0.24
CLIP1-208ENST00000537004 RARBP10826 455 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 AKR1A1P14550 325 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 LRRC26Q2I0M4 334 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 CCDC144BQ3MJ40 725 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 TMEM63BQ5T3F8 832 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 HOMER1Q86YM7 354 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 MSL3Q8N5Y2 521 aaKnown RBP13.58□□□□□ -0.24
CLIP1-208ENST00000537004 PIBF1Q8WXW3 757 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 FERMT2Q96AC1 680 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 NRBP1Q9UHY1 535 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 PLXNA1Q9UIW2 1896 aa13.58□□□□□ -0.24
CLIP1-208ENST00000537004 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-208ENST00000537004 hCG_1642624A0A1W2PR95 340 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 DNM1LO00429 736 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 CTAGE5O15320 804 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 CAPN2P17655 700 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 XBP1P17861 261 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 GRM4Q14833 912 aa13.57□□□□□ -0.24
CLIP1-208ENST00000537004 PTPAQ15257 358 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms