RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 LRRC4BQ9NT99 713 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 SERPINB13Q9UIV8 391 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 JRKLQ9Y4A0 524 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 MYO3BQ8WXR4 1341 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 ZNF263O14978 683 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 IDEP14735 1019 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 CLK2P49760 499 aaKnown RBP17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 MAP9Q49MG5 647 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 C2CD5Q86YS7 1000 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 PROM2Q8N271 834 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 NUDT12Q9BQG2 462 aa17.81■□□□□ 0.44
CHMP1A-202ENST00000535997 FOCADQ5VW36 1801 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 PRLRP16471 622 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 PICALMQ13492 652 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 GPATCH4Q5T3I0 446 aaKnown RBP17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 DPP8Q6V1X1 898 aaPredicted RBP17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 CUL5Q93034 780 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 TSG101Q99816 390 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 IFIH1Q9BYX4 1025 aaKnown RBP17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 MMRN2Q9H8L6 949 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 FAM207AQ9NSI2 230 aaPredicted RBP17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 ARHGAP20Q9P2F6 1191 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 PCDHA13Q9Y5I0 950 aa17.8■□□□□ 0.44
CHMP1A-202ENST00000535997 KLRG2A4D1S0 409 aaPredicted RBP17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 GCFC2P16383 781 aaKnown RBP17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 TNNI2P48788 182 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 CCDC96Q2M329 555 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 HSP90B2PQ58FF3 399 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 IQCEQ6IPM2 695 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 LRRC55Q6ZSA7 311 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 COA1Q9GZY4 146 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 JADE2Q9NQC1 790 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 DDX25Q9UHL0 483 aaKnown RBP17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 THSD7AQ9UPZ6 1657 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 MACROD2A1Z1Q3 448 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 TACC1O75410 805 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 HNRNPH2P55795 449 aaKnown RBP17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 SP8Q8IXZ3 490 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 HAS1Q92839 578 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 NAP1L4Q99733 375 aaKnown RBP17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 MED4Q9NPJ6 270 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 BMP2KQ9NSY1 1161 aaPredicted RBP17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 PCDHA12Q9UN75 941 aa17.79■□□□□ 0.44
CHMP1A-202ENST00000535997 PLEKP08567 350 aaPredicted RBP17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 KIF11P52732 1056 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 GYS2P54840 703 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 EIF6P56537 245 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 FKBP3Q00688 224 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 KRT26Q7Z3Y9 468 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 KCNK18Q7Z418 384 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 MYOCDQ8IZQ8 938 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 CAPZA3Q96KX2 299 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 NT5C3AQ9H0P0 336 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 ZBTB5O15062 677 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 EPHB6O15197 1021 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 EIF4A3P38919 411 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 HYIQ5T013 277 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 NEK11Q8NG66 645 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 FAM71BQ8TC56 605 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 DNAJC19Q96DA6 116 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 MTMR8Q96EF0 704 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 GLT8D2Q9H1C3 349 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 DEF6Q9H4E7 631 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 SH2D4AQ9H788 454 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 PSTPIP2Q9H939 334 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 VPS18Q9P253 973 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 SNX12Q9UMY4 172 aa17.78■□□□□ 0.44
CHMP1A-202ENST00000535997 LRRIQ3A6PVS8 624 aaPredicted RBP17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 AKR1B10O60218 316 aa17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 MARCH6O60337 910 aa17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 PPP1R11O60927 126 aaPredicted RBP17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 ITIH3Q06033 890 aa17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 RRAGAQ7L523 313 aa17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 CAGE1Q8TC20 777 aa17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 DDX4Q9NQI0 724 aaKnown RBP17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 C10orf71Q711Q0 1435 aa17.77■□□□□ 0.44
CHMP1A-202ENST00000535997 ECM1Q16610 540 aa17.77■□□□□ 0.43
CHMP1A-202ENST00000535997 UBE2SQ16763 222 aa17.77■□□□□ 0.43
CHMP1A-202ENST00000535997 BAP1Q92560 729 aa17.77■□□□□ 0.43
CHMP1A-202ENST00000535997 NUCKS1Q9H1E3 243 aaKnown RBP17.77■□□□□ 0.43
CHMP1A-202ENST00000535997 USP40Q9NVE5 1235 aa17.77■□□□□ 0.43
CHMP1A-202ENST00000535997 LRRC53A6NM62 1247 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 SLC26A4O43511 780 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 N4BP1O75113 896 aaKnown RBP17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 SHMT1P34896 483 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 ZCWPW2Q504Y3 356 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 MUM1L1Q5H9M0 696 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 TTBK2Q6IQ55 1244 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 CCDC70Q6NSX1 233 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 CREG2Q8IUH2 290 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 CCDC102AQ96A19 550 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 COL4A3BPQ9Y5P4 624 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 KDM3AQ9Y4C1 1321 aa17.76■□□□□ 0.43
CHMP1A-202ENST00000535997 PDE2AO00408 941 aaPredicted RBP17.75■□□□□ 0.43
CHMP1A-202ENST00000535997 ZNF185O15231 689 aa17.75■□□□□ 0.43
CHMP1A-202ENST00000535997 PJA2O43164 708 aa17.75■□□□□ 0.43
CHMP1A-202ENST00000535997 AARSP49588 968 aaKnown RBP eCLIP17.75■□□□□ 0.437e-7■■■■■ 54
CHMP1A-202ENST00000535997 LRRC41Q15345 812 aa17.75■□□□□ 0.43
CHMP1A-202ENST00000535997 ZNF572Q7Z3I7 529 aaPredicted RBP17.75■□□□□ 0.43
CHMP1A-202ENST00000535997 CLEC10AQ8IUN9 316 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms