RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TSPY3P0CV98 308 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 TSPY8P0CW00 308 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 PTGS1P23219 599 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 EPHX3Q9H6B9 360 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 SMC3Q9UQE7 1217 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 RBM47A0AV96 593 aaKnown RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 PATL2C9JE40 543 aaKnown RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 MBD3O95983 291 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 SLC3A2P08195 630 aaKnown RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 CYP2C9P11712 490 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 SLC1A4P43007 532 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 PDE4BQ07343 736 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 IKQ13123 557 aaPredicted RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 TOB2Q14106 344 aaPredicted RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 MUM1L1Q5H9M0 696 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 TMEM31Q5JXX7 168 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 RCSD1Q6JBY9 416 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 EEPD1Q7L9B9 569 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 DEFB128Q7Z7B8 93 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 TRIM44Q96DX7 344 aaPredicted RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 PDLIM2Q96JY6 352 aa9.52□□□□□ -0.89
NEDD8-207ENST00000533242 MTG1Q9BT17 334 aaPredicted RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 TRMT13Q9NUP7 481 aaKnown RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 LAMA2P24043 3122 aaKnown RBP9.52□□□□□ -0.89
NEDD8-207ENST00000533242 EPOPA6NHQ4 379 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 M0R2C6 588 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 FIBPO43427 364 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 MYL3P08590 195 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 CPT1AP50416 773 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 PURAQ00577 322 aaKnown RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 TFAP4Q01664 338 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 TAP1Q03518 808 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 DNM1Q05193 864 aaKnown RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 PTPN11Q06124 597 aaPredicted RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 TMEM63BQ5T3F8 832 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 FAM173BQ6P4H8 233 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 IFNL3Q8IZI9 196 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 RETREG2Q8NC44 543 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 ADD3Q9UEY8 706 aaKnown RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 PRR12Q9ULL5 1215 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 KIF28PB7ZC32 967 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 PITPNM1O00562 1244 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 KPNA6O60684 536 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 APPP05067 770 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 SIP14410 1827 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 HERC6Q8IVU3 1022 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 TMEM87AQ8NBN3 555 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 HLA-CQ95604 372 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 WDR11Q9BZH6 1224 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 NACAP1Q9BZK3 213 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 CERS4Q9HA82 394 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 CCPG1Q9ULG6 757 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 NCOR1O75376 2440 aa9.51□□□□□ -0.89
NEDD8-207ENST00000533242 TRIP12Q14669 1992 aaPredicted RBP9.51□□□□□ -0.89
NEDD8-207ENST00000533242 GPR37L1O60883 481 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 BAIAP3O94812 1187 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 ICAM1P05362 532 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 ALDH5A1P51649 535 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 LRRFIP1Q32MZ4 808 aaKnown RBP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 BRDTQ58F21 947 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 NFRKBQ6P4R8 1299 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 NSMFQ6X4W1 530 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 OR6J1Q8NGC5 347 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 ARNTL2Q8WYA1 636 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 GPHNQ9NQX3 736 aaPredicted RBP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 LMCD1Q9NZU5 365 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 PRRC2BQ5JSZ5 2229 aaKnown RBP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 EYSQ5T1H1 3165 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 PRUNE2Q8WUY3 3088 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 HIP1O00291 1037 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 NKRFO15226 690 aaKnown RBP eCLIP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 IQCF3P0C7M6 154 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 RPS6KB1P23443 525 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 SNAP25P60880 206 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 PPARAQ07869 468 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 STK3Q13188 491 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 GRB10Q13322 594 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 BFSP2Q13515 415 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 NBPF20Q3BBV1 942 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 KCTD1Q719H9 257 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 FERMT3Q86UX7 667 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 POTEDQ86YR6 584 aa9.5□□□□□ -0.89
NEDD8-207ENST00000533242 RANBP17Q9H2T7 1088 aaKnown RBP9.5□□□□□ -0.89
NEDD8-207ENST00000533242 VPS37CA5D8V6 355 aaPredicted RBP9.49□□□□□ -0.89
NEDD8-207ENST00000533242 ARHGEF15O94989 841 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 CYP21A2P08686 494 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 BAATQ14032 418 aaPredicted RBP9.49□□□□□ -0.89
NEDD8-207ENST00000533242 FAM47CQ5HY64 1035 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 KRT40Q6A162 431 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 BLOC1S2Q6QNY1 142 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 STOX1Q6ZVD7 989 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 DCAF4Q8WV16 495 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 PURBQ96QR8 312 aaKnown RBP9.49□□□□□ -0.89
NEDD8-207ENST00000533242 FTOQ9C0B1 505 aaKnown RBP eCLIP9.49□□□□□ -0.891e-6■■□□□ 13.4
NEDD8-207ENST00000533242 SH2B1Q9NRF2 756 aaPredicted RBP9.49□□□□□ -0.89
NEDD8-207ENST00000533242 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.49□□□□□ -0.89
NEDD8-207ENST00000533242 CHD9Q3L8U1 2897 aa9.49□□□□□ -0.89
NEDD8-207ENST00000533242 TET1Q8NFU7 2136 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms