RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ANO3Q9BYT9 981 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 TSHZ2Q9NRE2 1034 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 OGDHLQ9ULD0 1010 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 FAM184BQ9ULE4 1060 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 GNEQ9Y223 722 aaKnown RBP16.57■□□□□ 0.24
CPSF1-206ENST00000531480 SPDYE3A6NKU9 549 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 K7ELQ4 463 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-206ENST00000531480 CCND2P30279 289 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 NLRP5P59047 1200 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 IQSEC1Q6DN90 963 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 CCDC62Q6P9F0 684 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 BLIDQ8IZY5 108 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 U2AF1L4Q8WU68 220 aaKnown RBP16.56■□□□□ 0.24
CPSF1-206ENST00000531480 TMEM106CQ9BVX2 250 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 PDGFCQ9NRA1 345 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 GJB4Q9NTQ9 266 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 TMEM260Q9NX78 707 aa16.56■□□□□ 0.24
CPSF1-206ENST00000531480 ZHX1Q9UKY1 873 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-206ENST00000531480 DUSP11O75319 330 aaKnown RBP16.55■□□□□ 0.24
CPSF1-206ENST00000531480 CYP3A4P08684 503 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 DUSP28Q4G0W2 176 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 SCFD2Q8WU76 684 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 TNFRSF25Q93038 417 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 INTS4Q96HW7 963 aaKnown RBP16.55■□□□□ 0.24
CPSF1-206ENST00000531480 DEFB118Q96PH6 123 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 UPF3AQ9H1J1 476 aaKnown RBP16.55■□□□□ 0.24
CPSF1-206ENST00000531480 EHMT1Q9H9B1 1298 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 KCNJ14Q9UNX9 436 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 Q9Y3F1 56 aa16.55■□□□□ 0.24
CPSF1-206ENST00000531480 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-206ENST00000531480 EDIL3O43854 480 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 MMP1P03956 469 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 ICAM3P32942 547 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 ADCYAP1R1P41586 468 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 MNX1P50219 401 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-206ENST00000531480 JAKMIP3Q5VZ66 844 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 KRT40Q6A162 431 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 EEPD1Q7L9B9 569 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 UBE2Q1Q7Z7E8 422 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 FBXO18Q8NFZ0 1043 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 DAXXQ9UER7 740 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-206ENST00000531480 RBM19Q9Y4C8 960 aaKnown RBP16.54■□□□□ 0.24
CPSF1-206ENST00000531480 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-206ENST00000531480 UBIAD1Q9Y5Z9 338 aa16.54■□□□□ 0.24
CPSF1-206ENST00000531480 NKRFO15226 690 aaKnown RBP eCLIP16.53■□□□□ 0.24
CPSF1-206ENST00000531480 ADAMTS4O75173 837 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 ARIH2O95376 493 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 TGFB3P10600 412 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 SMPD1P17405 629 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 EN2P19622 333 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-206ENST00000531480 CNGA1P29973 690 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 CIITAP33076 1130 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 TNFAIP2Q03169 654 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 KCNV1Q6PIU1 500 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 ANKLE1Q8NAG6 615 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 RASGRP4Q8TDF6 673 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 WDR11Q9BZH6 1224 aa16.53■□□□□ 0.24
CPSF1-206ENST00000531480 MKI67P46013 3256 aaKnown RBP16.53■□□□□ 0.24
CPSF1-206ENST00000531480 SPATA31C2B4DYI2 1134 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 CTAGE5O15320 804 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 RARBP10826 455 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 MYCLP12524 364 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-206ENST00000531480 ITGB5P18084 799 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 CST5P28325 142 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-206ENST00000531480 GJA9P57773 515 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 ARHGAP4P98171 946 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 SEMA3FQ13275 785 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 TTLL4Q14679 1199 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 NIPA1Q7RTP0 329 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 OXER1Q8TDS5 423 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 GPRASP2Q96D09 838 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 PGBD1Q96JS3 809 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 C8orf76Q96K31 380 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 DDX41Q9UJV9 622 aaKnown RBP16.52■□□□□ 0.24
CPSF1-206ENST00000531480 KIF3AQ9Y496 699 aa16.52■□□□□ 0.24
CPSF1-206ENST00000531480 SYNRGQ9UMZ2 1314 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 MEIS1O00470 390 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 MAFGO15525 162 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 GJB2P29033 226 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 USP11P51784 963 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 GNPTABQ3T906 1256 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 TMEM63BQ5T3F8 832 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 CCSAPQ6IQ19 270 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-206ENST00000531480 KRT25Q7Z3Z0 450 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 FAM184AQ8NB25 1140 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 KLHDC9Q8NEP7 349 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 EMID1Q96A84 441 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-206ENST00000531480 LENG1Q96BZ8 264 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-206ENST00000531480 SENP7Q9BQF6 1050 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 JADE2Q9NQC1 790 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 XPNPEP3Q9NQH7 507 aa16.51■□□□□ 0.23
CPSF1-206ENST00000531480 IGLV3-22A0A075B6J6 115 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 FIBPO43427 364 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 SLC34A2O95436 690 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 TXNP10599 105 aaKnown RBP16.5■□□□□ 0.23
CPSF1-206ENST00000531480 KRT2P35908 639 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 TRIM29Q14134 588 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 LRRC41Q15345 812 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 CEP55Q53EZ4 464 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 PRPF38BQ5VTL8 546 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms