RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 KANK3Q6NY19 840 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 ARHGAP39Q9C0H5 1083 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 MAF1Q9H063 256 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 USP25Q9UHP3 1055 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 ZNF214Q9UL59 606 aaPredicted RBP23.99■■□□□ 1.43
VPS28-212ENST00000530836 ATP2A1O14983 1001 aa23.98■■□□□ 1.43
VPS28-212ENST00000530836 CTGFP29279 349 aa23.98■■□□□ 1.43
VPS28-212ENST00000530836 SREBF1P36956 1147 aa23.98■■□□□ 1.43
VPS28-212ENST00000530836 TXLNAP40222 546 aa23.98■■□□□ 1.43
VPS28-212ENST00000530836 ARHGEF6Q15052 776 aa23.98■■□□□ 1.43
VPS28-212ENST00000530836 CYP3A7-CYP3A51PA0A087WV96 503 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 CYP3A7P24462 503 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 STAT3P40763 770 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 FCGRTP55899 365 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 GHRHRQ02643 423 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 PLS1Q14651 629 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 SASS6Q6UVJ0 657 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 MOV10L1Q9BXT6 1211 aaKnown RBP23.97■■□□□ 1.43
VPS28-212ENST00000530836 TMEM60Q9H2L4 133 aa23.97■■□□□ 1.43
VPS28-212ENST00000530836 CFBP00751 764 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 CALCRLQ16602 461 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 SPECC1Q5M775 1068 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 CRYGNQ8WXF5 182 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 SYMPKQ92797 1274 aaKnown RBP23.96■■□□□ 1.43
VPS28-212ENST00000530836 TRIM47Q96LD4 638 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 AGBL1Q96MI9 1066 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 FUCA2Q9BTY2 467 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 PORCNQ9H237 461 aa23.96■■□□□ 1.43
VPS28-212ENST00000530836 DDX25Q9UHL0 483 aaKnown RBP23.96■■□□□ 1.43
VPS28-212ENST00000530836 ECM2O94769 699 aaPredicted RBP23.95■■□□□ 1.43
VPS28-212ENST00000530836 MAPK4P31152 587 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 ARHGAP4P98171 946 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 KRBA2Q6ZNG9 492 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 RIOX2Q8IUF8 465 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 CKAP2LQ8IYA6 745 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 CPXCR1Q8N123 301 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 CNNM3Q8NE01 707 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 SHCBP1Q8NEM2 672 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 MTMR9Q96QG7 549 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 TEX13BQ9BXU2 312 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 RAB34Q9BZG1 259 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 EFCC1Q9HA90 598 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 GRPEL1Q9HAV7 217 aa23.95■■□□□ 1.43
VPS28-212ENST00000530836 RAVER2Q9HCJ3 691 aaKnown RBP23.95■■□□□ 1.43
VPS28-212ENST00000530836 CAVIN2O95810 425 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 SLC25A27O95847 323 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 GNRH1P01148 92 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 CYP3A4P08684 503 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 HSD17B4P51659 736 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 IL17AQ16552 155 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 TMEM266Q2M3C6 531 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 MBOAT7Q96N66 472 aa23.95■■□□□ 1.42
VPS28-212ENST00000530836 POLR2DO15514 142 aaKnown RBP23.94■■□□□ 1.42
VPS28-212ENST00000530836 EDIL3O43854 480 aa23.94■■□□□ 1.42
VPS28-212ENST00000530836 TDP2O95551 362 aa23.94■■□□□ 1.42
VPS28-212ENST00000530836 CIITAP33076 1130 aa23.94■■□□□ 1.42
VPS28-212ENST00000530836 SNRNP48Q6IEG0 339 aaKnown RBP23.94■■□□□ 1.42
VPS28-212ENST00000530836 POTEDQ86YR6 584 aa23.94■■□□□ 1.42
VPS28-212ENST00000530836 EPSTI1Q96J88 318 aa23.94■■□□□ 1.42
VPS28-212ENST00000530836 PARP14Q460N5 1801 aa23.93■■□□□ 1.42
VPS28-212ENST00000530836 TNPO2O14787 897 aaKnown RBP23.93■■□□□ 1.42
VPS28-212ENST00000530836 ERCC3P19447 782 aa23.93■■□□□ 1.42
VPS28-212ENST00000530836 HOXA13P31271 388 aaPredicted RBP23.93■■□□□ 1.42
VPS28-212ENST00000530836 FXR2P51116 673 aaKnown RBP eCLIP23.93■■□□□ 1.42
VPS28-212ENST00000530836 TKFCQ3LXA3 575 aa23.93■■□□□ 1.42
VPS28-212ENST00000530836 MROH8Q9H579 483 aa23.93■■□□□ 1.42
VPS28-212ENST00000530836 KIAA1468Q9P260 1216 aa23.93■■□□□ 1.42
VPS28-212ENST00000530836 TBX3O15119 743 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 ALAS1P13196 640 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 COPB2P35606 906 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 DEKP35659 375 aaKnown RBP23.92■■□□□ 1.42
VPS28-212ENST00000530836 TYRO3Q06418 890 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 PDIA5Q14554 519 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 LONRF3Q496Y0 759 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 Q4G0T1 1027 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 OTOP1Q7RTM1 612 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 CTU1Q7Z7A3 348 aaKnown RBP23.92■■□□□ 1.42
VPS28-212ENST00000530836 CLEC4DQ8WXI8 215 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 CCSER1Q9C0I3 900 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 RIPK3Q9Y572 518 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 TRIM17Q9Y577 477 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 A0A0G2JMZ2 1700 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 CASP8AP2Q9UKL3 1982 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 SLC37A4O43826 429 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 HOXD10P28358 340 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 UBA7P41226 1012 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 ZRSR1Q15695 479 aaKnown RBP23.92■■□□□ 1.42
VPS28-212ENST00000530836 USP49Q70CQ1 688 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 GPR142Q7Z601 462 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 PLEKHH3Q7Z736 793 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 NCAPG2Q86XI2 1143 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 SLFN12Q8IYM2 578 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 IQUBQ8NA54 791 aa23.92■■□□□ 1.42
VPS28-212ENST00000530836 SLFN14P0C7P3 912 aa23.91■■□□□ 1.42
VPS28-212ENST00000530836 WDR78Q5VTH9 848 aa23.91■■□□□ 1.42
VPS28-212ENST00000530836 FCHSD1Q86WN1 690 aa23.91■■□□□ 1.42
VPS28-212ENST00000530836 CEP57L1Q8IYX8 460 aa23.91■■□□□ 1.42
VPS28-212ENST00000530836 IGSF22Q8N9C0 903 aa23.91■■□□□ 1.42
VPS28-212ENST00000530836 CCDC39Q9UFE4 941 aa23.91■■□□□ 1.42
VPS28-212ENST00000530836 MYH7BA7E2Y1 1941 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms