RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 AGBL1Q96MI9 1066 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 WRNIP1Q96S55 665 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 POLR2AP24928 1970 aaKnown RBP23.23■■□□□ 1.31
VPS28-209ENST00000528142 VCAM1P19320 739 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 CDK11BP21127 795 aaKnown RBP23.22■■□□□ 1.31
VPS28-209ENST00000528142 USP14P54578 494 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 GSDMDP57764 484 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 SPP2Q13103 211 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 PAK1Q13153 545 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 FAM20AQ96MK3 541 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 UIMC1Q96RL1 719 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 CNNM4Q6P4Q7 775 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 DLK2Q6UY11 383 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 APTXQ7Z2E3 356 aaKnown RBP23.22■■□□□ 1.31
VPS28-209ENST00000528142 NELFBQ8WX92 580 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 L3MBTL3Q96JM7 780 aaPredicted RBP23.22■■□□□ 1.31
VPS28-209ENST00000528142 CCPG1Q9ULG6 757 aa23.22■■□□□ 1.31
VPS28-209ENST00000528142 IGLV3-22A0A075B6J6 115 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 MYMKA6NI61 221 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 MSH4O15457 936 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 BACE1P56817 501 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 ASIC1P78348 528 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 VSTM4Q8IW00 320 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 C17orf53Q8N3J3 647 aaPredicted RBP23.21■■□□□ 1.31
VPS28-209ENST00000528142 CYP2W1Q8TAV3 490 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 KLRG1Q96E93 195 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 SLC38A10Q9HBR0 1119 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 SPTLC3Q9NUV7 552 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 FZD1Q9UP38 647 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 SMCHD1A6NHR9 2005 aa23.21■■□□□ 1.31
VPS28-209ENST00000528142 SSC5DA1L4H1 1573 aa23.2■■□□□ 1.31
VPS28-209ENST00000528142 CCT6AP40227 531 aaKnown RBP23.2■■□□□ 1.3
VPS28-209ENST00000528142 HSD17B4P51659 736 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 DHX8Q14562 1220 aaKnown RBP23.2■■□□□ 1.3
VPS28-209ENST00000528142 NOLC1Q14978 699 aaKnown RBP eCLIP23.2■■□□□ 1.3
VPS28-209ENST00000528142 ZNF280CQ8ND82 737 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 NT5C3AQ9H0P0 336 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 AS3MTQ9HBK9 375 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 PICK1Q9NRD5 415 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 ADARB2Q9NS39 739 aaKnown RBP23.2■■□□□ 1.3
VPS28-209ENST00000528142 PPP1R9AQ9ULJ8 1098 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 MAPK8IP1Q9UQF2 711 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 KDM3AQ9Y4C1 1321 aa23.2■■□□□ 1.3
VPS28-209ENST00000528142 POTECB2RU33 542 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 STAT3P40763 770 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 CLEC4DQ8WXI8 215 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 CCDC47Q96A33 483 aaKnown RBP23.19■■□□□ 1.3
VPS28-209ENST00000528142 GTPBP4Q9BZE4 634 aaKnown RBP23.19■■□□□ 1.3
VPS28-209ENST00000528142 TANGO6Q9C0B7 1094 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 RPAP3Q9H6T3 665 aaPredicted RBP23.19■■□□□ 1.3
VPS28-209ENST00000528142 PITPNM2Q9BZ72 1349 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 DOCK1Q14185 1865 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 PVALEFA0A1B0GWK0 134 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 GLTPD2A6NH11 291 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 COBLO75128 1261 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 OFD1O75665 1012 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 GHRHRQ02643 423 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 PDE4DQ08499 809 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 NR1I3Q14994 352 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 LRRC27Q9C0I9 530 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 EXOC1Q9NV70 894 aa23.19■■□□□ 1.3
VPS28-209ENST00000528142 A0A1B0GTH6 734 aa23.18■■□□□ 1.3
VPS28-209ENST00000528142 FLOT1O75955 427 aa23.18■■□□□ 1.3
VPS28-209ENST00000528142 ZNF76P36508 570 aa23.18■■□□□ 1.3
VPS28-209ENST00000528142 NOL9Q5SY16 702 aaKnown RBP23.18■■□□□ 1.3
VPS28-209ENST00000528142 ARMCX5Q6P1M9 558 aa23.18■■□□□ 1.3
VPS28-209ENST00000528142 C12orf42Q96LP6 360 aa23.18■■□□□ 1.3
VPS28-209ENST00000528142 VAV3Q9UKW4 847 aa23.18■■□□□ 1.3
VPS28-209ENST00000528142 CCZ1BP86790 482 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 CCZ1P86791 482 aaPredicted RBP23.17■■□□□ 1.3
VPS28-209ENST00000528142 STK4Q13043 487 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 SUPT20HL1Q3ZLR7 823 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 COBLL1Q53SF7 1204 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 DPY19L2Q6NUT2 758 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 UNC13DQ70J99 1090 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 EHMT1Q9H9B1 1298 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 ZHX2Q9Y6X8 837 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 MED24O75448 989 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 CCDC150Q8NCX0 1101 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 DHTKD1Q96HY7 919 aaPredicted RBP23.17■■□□□ 1.3
VPS28-209ENST00000528142 RAVER2Q9HCJ3 691 aaKnown RBP23.17■■□□□ 1.3
VPS28-209ENST00000528142 KIAA1024Q9UPX6 916 aa23.17■■□□□ 1.3
VPS28-209ENST00000528142 LRRC10BA6NIK2 292 aa23.16■■□□□ 1.3
VPS28-209ENST00000528142 NFIBO00712 420 aa23.16■■□□□ 1.3
VPS28-209ENST00000528142 PMS1P54277 932 aaKnown RBP23.16■■□□□ 1.3
VPS28-209ENST00000528142 STIM1Q13586 685 aa23.16■■□□□ 1.3
VPS28-209ENST00000528142 TPD52L1Q16890 204 aaPredicted RBP23.16■■□□□ 1.3
VPS28-209ENST00000528142 DDX12PQ92771 950 aa23.16■■□□□ 1.3
VPS28-209ENST00000528142 ZC3H4Q9UPT8 1303 aaKnown RBP23.16■■□□□ 1.3
VPS28-209ENST00000528142 RPTORQ8N122 1335 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 POTEB3A0JP26 581 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 PSMA7O14818 248 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 FDX1P10109 184 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 FCER1AP12319 257 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 HAUS3Q68CZ6 603 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 POTEBQ6S5H4 581 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 MCF2L2Q86YR7 1114 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 CPXCR1Q8N123 301 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.15■■□□□ 1.37e-9■□□□□ 10.3
VPS28-209ENST00000528142 COL20A1Q9P218 1284 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms