RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 XIRP2A4UGR9 3374 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 MYH7BA7E2Y1 1941 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 B4E1Z4 1266 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 BAIAP3O94812 1187 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 STXBP2Q15833 593 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 B4GALNT3Q6L9W6 998 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 CWC27Q6UX04 472 aaKnown RBP27.54■■■□□ 2
CPSF1-202ENST00000527827 CHST3Q7LGC8 479 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 MCF2L2Q86YR7 1114 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 ENAHQ8N8S7 591 aaPredicted RBP27.54■■■□□ 2
CPSF1-202ENST00000527827 CAGE1Q8TC20 777 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 AFAP1L1Q8TED9 768 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 DHX38Q92620 1227 aaKnown RBP27.54■■■□□ 2
CPSF1-202ENST00000527827 OSBPL3Q9H4L5 887 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 JMJD4Q9H9V9 463 aa27.54■■■□□ 2
CPSF1-202ENST00000527827 KRT40Q6A162 431 aa27.53■■■□□ 2
CPSF1-202ENST00000527827 FBXO11Q86XK2 927 aa27.53■■■□□ 2
CPSF1-202ENST00000527827 NECAB3Q96P71 396 aaPredicted RBP27.53■■■□□ 2
CPSF1-202ENST00000527827 ZSWIM5Q9P217 1185 aa27.53■■■□□ 2
CPSF1-202ENST00000527827 MRPL11Q9Y3B7 192 aaKnown RBP27.53■■■□□ 2
CPSF1-202ENST00000527827 KIF28PB7ZC32 967 aa27.52■■■□□ 2
CPSF1-202ENST00000527827 GTPBP6O43824 516 aaPredicted RBP27.52■■■□□ 2
CPSF1-202ENST00000527827 CASTP20810 708 aaKnown RBP27.52■■■□□ 2
CPSF1-202ENST00000527827 CHD1LQ86WJ1 897 aa27.52■■■□□ 2
CPSF1-202ENST00000527827 CCDC155Q8N6L0 562 aa27.52■■■□□ 2
CPSF1-202ENST00000527827 ARNTL2Q8WYA1 636 aa27.52■■■□□ 2
CPSF1-202ENST00000527827 DDX41Q9UJV9 622 aaKnown RBP27.52■■■□□ 2
CPSF1-202ENST00000527827 PARP1P09874 1014 aaKnown RBP27.51■■□□□ 1.99
CPSF1-202ENST00000527827 SELPP16109 830 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 EIF2AK2P19525 551 aaKnown RBP27.51■■□□□ 1.99
CPSF1-202ENST00000527827 RBL2Q08999 1139 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 SKIV2LQ15477 1246 aaKnown RBP27.51■■□□□ 1.99
CPSF1-202ENST00000527827 ARHGEF16Q5VV41 709 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 SPRED2Q7Z698 418 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 VAT1LQ9HCJ6 419 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 DIAPH3Q9NSV4 1193 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 GTF2IRD1Q9UHL9 959 aa27.51■■□□□ 1.99
CPSF1-202ENST00000527827 OPLAHO14841 1288 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 KCNQ1P51787 676 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 WDR5P61964 334 aaKnown RBP27.5■■□□□ 1.99
CPSF1-202ENST00000527827 DGKDQ16760 1214 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 LRRC8DQ7L1W4 858 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 EMID1Q96A84 441 aaPredicted RBP27.5■■□□□ 1.99
CPSF1-202ENST00000527827 DSCC1Q9BVC3 393 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 RWDD1Q9H446 243 aaPredicted RBP27.5■■□□□ 1.99
CPSF1-202ENST00000527827 PXMP2Q9NR77 195 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 HDAC6Q9UBN7 1215 aa27.5■■□□□ 1.99
CPSF1-202ENST00000527827 COL4A4P53420 1690 aaPredicted RBP27.49■■□□□ 1.99
CPSF1-202ENST00000527827 DHX16O60231 1041 aaKnown RBP27.49■■□□□ 1.99
CPSF1-202ENST00000527827 EIF3JO75822 258 aaKnown RBP27.49■■□□□ 1.99
CPSF1-202ENST00000527827 NR3C2P08235 984 aa27.49■■□□□ 1.99
CPSF1-202ENST00000527827 KCNJ6P48051 423 aa27.49■■□□□ 1.99
CPSF1-202ENST00000527827 NUCB1Q02818 461 aa27.49■■□□□ 1.99
CPSF1-202ENST00000527827 AAK1Q2M2I8 961 aa27.49■■□□□ 1.99
CPSF1-202ENST00000527827 LCHNA4D1U4 455 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 TLL1O43897 1013 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 NBNO60934 754 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 IGHDP01880 384 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 CXCL10P02778 98 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 CKBP12277 381 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 PSEN2P49810 448 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 AAMPQ13685 434 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 TCTN1Q2MV58 587 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 TMCO2Q7Z6W1 182 aaPredicted RBP27.48■■□□□ 1.99
CPSF1-202ENST00000527827 STAG2Q8N3U4 1231 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 ALG1Q9BT22 464 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 RAPGEFL1Q9UHV5 662 aa27.48■■□□□ 1.99
CPSF1-202ENST00000527827 HAS3O00219 553 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 LPXNO60711 386 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 CFBP00751 764 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 HSD17B4P51659 736 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 DEFB103AP81534 67 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 GHRHRQ02643 423 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 GRB10Q13322 594 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 IMMTQ16891 758 aaKnown RBP27.47■■□□□ 1.99
CPSF1-202ENST00000527827 CNKSR3Q6P9H4 555 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 C7orf31Q8N865 590 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 KRT23Q9C075 422 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 MRVI1Q9Y6F6 885 aa27.47■■□□□ 1.99
CPSF1-202ENST00000527827 RBAK-RBAKDNI3L0D1 243 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 HIP1O00291 1037 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 PARNO95453 639 aaKnown RBP27.46■■□□□ 1.99
CPSF1-202ENST00000527827 F2P00734 622 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 ZNF286BP0CG31 522 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 LAMC2Q13753 1193 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 MFSD10Q14728 455 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 PPTC7Q8NI37 304 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 AMNQ9BXJ7 453 aa27.46■■□□□ 1.99
CPSF1-202ENST00000527827 PPP1R11O60927 126 aaPredicted RBP27.45■■□□□ 1.98
CPSF1-202ENST00000527827 RGS20O76081 388 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 KIAA0753Q2KHM9 967 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 TRIM71Q2Q1W2 868 aaKnown RBP27.45■■□□□ 1.98
CPSF1-202ENST00000527827 TRAF7Q6Q0C0 670 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 WNT8BQ93098 351 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 MTMR8Q96EF0 704 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 KATNAL1Q9BW62 490 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 CTNNA3Q9UI47 895 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 COG5Q9UP83 839 aa27.45■■□□□ 1.98
CPSF1-202ENST00000527827 HOXD8P13378 290 aaPredicted RBP27.44■■□□□ 1.98
CPSF1-202ENST00000527827 PTK7Q13308 1070 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms