RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 EPHB4P54760 987 aa34.29■■■■□ 3.08
SYNPO-203ENST00000518872 APOA5Q6Q788 366 aa34.29■■■■□ 3.08
SYNPO-203ENST00000518872 TMTC3Q6ZXV5 915 aa34.29■■■■□ 3.08
SYNPO-203ENST00000518872 ALDH8A1Q9H2A2 487 aaPredicted RBP34.29■■■■□ 3.08
SYNPO-203ENST00000518872 PIK3CDO00329 1044 aa34.28■■■■□ 3.08
SYNPO-203ENST00000518872 B4GALT4O60513 344 aa34.28■■■■□ 3.08
SYNPO-203ENST00000518872 RGS20O76081 388 aa34.28■■■■□ 3.08
SYNPO-203ENST00000518872 ERICH6BQ5W0A0 696 aa34.28■■■■□ 3.08
SYNPO-203ENST00000518872 SYNE3Q6ZMZ3 975 aa34.28■■■■□ 3.08
SYNPO-203ENST00000518872 MRVI1Q9Y6F6 885 aa34.28■■■■□ 3.08
SYNPO-203ENST00000518872 MMP3P08254 477 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 CCND2P30279 289 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 HSPA4P34932 840 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 PPIGQ13427 754 aaKnown RBP eCLIP34.27■■■■□ 3.08
SYNPO-203ENST00000518872 NFRKBQ6P4R8 1299 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 MICU3Q86XE3 530 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 IL31RAQ8NI17 732 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 AFG1LQ8WV93 481 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 PIBF1Q8WXW3 757 aa34.27■■■■□ 3.08
SYNPO-203ENST00000518872 EPB41L2O43491 1005 aaKnown RBP34.26■■■■□ 3.08
SYNPO-203ENST00000518872 TGFB3P10600 412 aa34.26■■■■□ 3.08
SYNPO-203ENST00000518872 MYCLP12524 364 aaPredicted RBP34.26■■■■□ 3.08
SYNPO-203ENST00000518872 RCAN1P53805 252 aa34.26■■■■□ 3.08
SYNPO-203ENST00000518872 PTPN11Q06124 597 aaPredicted RBP34.26■■■■□ 3.08
SYNPO-203ENST00000518872 FAM109BQ6ICB4 259 aaPredicted RBP34.26■■■■□ 3.08
SYNPO-203ENST00000518872 FCHSD1Q86WN1 690 aa34.26■■■■□ 3.08
SYNPO-203ENST00000518872 TMEM199Q8N511 208 aa34.26■■■■□ 3.08
SYNPO-203ENST00000518872 RBM28Q9NW13 759 aaKnown RBP34.26■■■■□ 3.08
SYNPO-203ENST00000518872 STAM2O75886 525 aa34.25■■■■□ 3.07
SYNPO-203ENST00000518872 SUPT20HL2P0C7V6 817 aa34.25■■■■□ 3.07
SYNPO-203ENST00000518872 LAMC2Q13753 1193 aa34.25■■■■□ 3.07
SYNPO-203ENST00000518872 TRPV6Q9H1D0 765 aa34.25■■■■□ 3.07
SYNPO-203ENST00000518872 HIPK3Q9H422 1215 aa34.25■■■■□ 3.07
SYNPO-203ENST00000518872 MEIS2O14770 477 aa34.24■■■■□ 3.07
SYNPO-203ENST00000518872 REC8O95072 547 aa34.24■■■■□ 3.07
SYNPO-203ENST00000518872 NBPF20Q3BBV1 942 aa34.24■■■■□ 3.07
SYNPO-203ENST00000518872 CMTR1Q8N1G2 835 aaKnown RBP34.24■■■■□ 3.07
SYNPO-203ENST00000518872 NOC4LQ9BVI4 516 aaKnown RBP34.24■■■■□ 3.07
SYNPO-203ENST00000518872 PPP1R12CQ9BZL4 782 aa34.24■■■■□ 3.07
SYNPO-203ENST00000518872 RAB11FIP4Q86YS3 637 aa34.23■■■■□ 3.07
SYNPO-203ENST00000518872 PPTC7Q8NI37 304 aa34.23■■■■□ 3.07
SYNPO-203ENST00000518872 CUL5Q93034 780 aa34.23■■■■□ 3.07
SYNPO-203ENST00000518872 TCEANC2Q96MN5 208 aa34.23■■■■□ 3.07
SYNPO-203ENST00000518872 BRPF3Q9ULD4 1205 aa34.23■■■■□ 3.07
SYNPO-203ENST00000518872 HOXD8P13378 290 aaPredicted RBP34.22■■■■□ 3.07
SYNPO-203ENST00000518872 CASTP20810 708 aaKnown RBP34.22■■■■□ 3.07
SYNPO-203ENST00000518872 SMAD3P84022 425 aaKnown RBP34.22■■■■□ 3.07
SYNPO-203ENST00000518872 RNPC3Q96LT9 517 aaKnown RBP34.22■■■■□ 3.07
SYNPO-203ENST00000518872 ZBTB43O43298 467 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 CSF2RAP15509 400 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 CYP2C18P33260 490 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 DGKDQ16760 1214 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 XRRA1Q6P2D8 792 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 TEX2Q8IWB9 1127 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 DHX37Q8IY37 1157 aaKnown RBP34.21■■■■□ 3.07
SYNPO-203ENST00000518872 FBXL16Q8N461 479 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 DEFB123Q8N688 67 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 SMARCC2Q8TAQ2 1214 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 INPP4AQ96PE3 977 aaPredicted RBP34.21■■■■□ 3.07
SYNPO-203ENST00000518872 SNX14Q9Y5W7 946 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 CNTNAP5Q8WYK1 1306 aa34.21■■■■□ 3.07
SYNPO-203ENST00000518872 ICAM3P32942 547 aa34.2■■■■□ 3.07
SYNPO-203ENST00000518872 MRPS9P82933 396 aaKnown RBP34.2■■■■□ 3.07
SYNPO-203ENST00000518872 GNPTABQ3T906 1256 aa34.2■■■■□ 3.07
SYNPO-203ENST00000518872 MYSM1Q5VVJ2 828 aa34.2■■■■□ 3.07
SYNPO-203ENST00000518872 USP17L6PQ6QN14 398 aa34.2■■■■□ 3.07
SYNPO-203ENST00000518872 C16orf59Q7L2K0 433 aa34.2■■■■□ 3.07
SYNPO-203ENST00000518872 SESTD1Q86VW0 696 aa34.2■■■■□ 3.07
SYNPO-203ENST00000518872 BUD13Q9BRD0 619 aaKnown RBP eCLIP34.2■■■■□ 3.07
SYNPO-203ENST00000518872 TRMT13Q9NUP7 481 aaKnown RBP34.2■■■■□ 3.07
SYNPO-203ENST00000518872 FUT2Q10981 343 aa34.19■■■■□ 3.06
SYNPO-203ENST00000518872 RTN1Q16799 776 aa34.19■■■■□ 3.06
SYNPO-203ENST00000518872 CELF3Q5SZQ8 465 aaKnown RBP34.19■■■■□ 3.06
SYNPO-203ENST00000518872 PSRC1Q6PGN9 363 aaPredicted RBP34.19■■■■□ 3.06
SYNPO-203ENST00000518872 KAT2BQ92831 832 aa34.19■■■■□ 3.06
SYNPO-203ENST00000518872 IL23AQ9NPF7 189 aa34.19■■■■□ 3.06
SYNPO-203ENST00000518872 PPP4R2Q9NY27 417 aa34.19■■■■□ 3.06
SYNPO-203ENST00000518872 UBA1P22314 1058 aaKnown RBP34.18■■■■□ 3.06
SYNPO-203ENST00000518872 TMEM240Q5SV17 173 aa34.18■■■■□ 3.06
SYNPO-203ENST00000518872 RASIP1Q5U651 963 aa34.18■■■■□ 3.06
SYNPO-203ENST00000518872 PCNX4Q63HM2 1172 aa34.18■■■■□ 3.06
SYNPO-203ENST00000518872 CCDC82Q8N4S0 544 aa34.18■■■■□ 3.06
SYNPO-203ENST00000518872 PSTPIP2Q9H939 334 aa34.18■■■■□ 3.06
SYNPO-203ENST00000518872 UMODL1Q5DID0 1318 aa34.18■■■■□ 3.06
SYNPO-203ENST00000518872 SP2Q02086 613 aa34.17■■■■□ 3.06
SYNPO-203ENST00000518872 FAM47CQ5HY64 1035 aa34.17■■■■□ 3.06
SYNPO-203ENST00000518872 WNT8AQ9H1J5 351 aa34.17■■■■□ 3.06
SYNPO-203ENST00000518872 MTMR10Q9NXD2 777 aa34.17■■■■□ 3.06
SYNPO-203ENST00000518872 KLF18A0A0U1RQI7 1052 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 PPFIA4O75335 1185 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 GGPS1O95749 300 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 F2P00734 622 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 Q7L0L9 218 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 JAKMIP1Q96N16 626 aaKnown RBP34.16■■■■□ 3.06
SYNPO-203ENST00000518872 KATNAL1Q9BW62 490 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 AGXT2Q9BYV1 514 aa34.16■■■■□ 3.06
SYNPO-203ENST00000518872 BLOC1S2Q6QNY1 142 aa34.15■■■■□ 3.06
SYNPO-203ENST00000518872 FAM217BQ9NTX9 383 aaPredicted RBP34.15■■■■□ 3.06
SYNPO-203ENST00000518872 TANC1Q9C0D5 1861 aa34.15■■■■□ 3.06
SYNPO-203ENST00000518872 NID2Q14112 1375 aa34.14■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms