RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 SIN3BO75182 1162 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 PRB1P04280 392 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 PHKG2P15735 406 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 CDK11BP21127 795 aaKnown RBP4.47□□□□□ -1.69
CPNE3-204ENST00000517862 PSMA6P60900 246 aaKnown RBP4.47□□□□□ -1.69
CPNE3-204ENST00000517862 DAB2P98082 770 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 FANCCQ00597 558 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ATP2B2Q01814 1243 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 SIGLEC14Q08ET2 396 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ORC1Q13415 861 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ALKBH2Q6NS38 261 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 TPTE2Q6XPS3 522 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 CBLL1Q75N03 491 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ANKRD13AQ8IZ07 590 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ZDHHC1Q8WTX9 485 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 XAGE2Q96GT9 111 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 POP1Q99575 1024 aaKnown RBP4.47□□□□□ -1.69
CPNE3-204ENST00000517862 SLC38A3Q99624 504 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 TINF2Q9BSI4 451 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ACBD3Q9H3P7 528 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 DBNDD1Q9H9R9 158 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 CERS4Q9HA82 394 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 KCNQ5Q9NR82 932 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 ZNF232Q9UNY5 417 aa4.47□□□□□ -1.69
CPNE3-204ENST00000517862 IQSEC3Q9UPP2 1182 aaPredicted RBP4.47□□□□□ -1.69
CPNE3-204ENST00000517862 RLFQ13129 1914 aa4.46□□□□□ -1.69
CPNE3-204ENST00000517862 EML1O00423 815 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 RAG1P15918 1043 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 ZAP70P43403 619 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 CABP4P57796 275 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 ENOX2Q16206 610 aaKnown RBP4.46□□□□□ -1.7
CPNE3-204ENST00000517862 C4orf17Q53FE4 359 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 C19orf48Q6RUI8 117 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 NME9Q86XW9 330 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 RHBDD1Q8TEB9 315 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 DHX38Q92620 1227 aaKnown RBP4.46□□□□□ -1.7
CPNE3-204ENST00000517862 TANGO6Q9C0B7 1094 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 CCSER2Q9H7U1 834 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 CAPN10Q9HC96 672 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 RAXQ9Y2V3 346 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 PCDHGB7Q9Y5F8 929 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 ASXL3Q9C0F0 2248 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 DDX60Q8IY21 1712 aaKnown RBP4.46□□□□□ -1.7
CPNE3-204ENST00000517862 SALL1Q9NSC2 1324 aa4.46□□□□□ -1.7
CPNE3-204ENST00000517862 RTL9Q8NET4 1388 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 PHIPQ8WWQ0 1821 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 EPOPA6NHQ4 379 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 FAM177BA6PVY3 158 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 H3BQ06 376 aaPredicted RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 PDGFBP01127 241 aaPredicted RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 PDGFAP04085 211 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 CETPP11597 493 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 MYOGP15173 224 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 BRD2P25440 801 aaKnown RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ZNF76P36508 570 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 PLA2G4AP47712 749 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ZNF200P98182 395 aaPredicted RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 LMNB2Q03252 620 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 TRIM60Q495X7 471 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 CRY2Q49AN0 593 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ALDH16A1Q8IZ83 802 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 STAG2Q8N3U4 1231 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 TMEM105Q8N8V8 129 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ZSCAN18Q8TBC5 510 aaPredicted RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ZCCHC14Q8WYQ9 949 aaKnown RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 RNF34Q969K3 372 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ALKBH8Q96BT7 664 aaKnown RBP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 MYO19Q96H55 970 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 TOX2Q96NM4 488 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 CITED4Q96RK1 184 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.45□□□□□ -1.7
CPNE3-204ENST00000517862 MARK1Q9P0L2 795 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 CHMP3Q9Y3E7 222 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 ATP6V0A2Q9Y487 856 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 PCDHGC5Q9Y5F6 944 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 OTOFQ9HC10 1997 aa4.45□□□□□ -1.7
CPNE3-204ENST00000517862 FRMPD3Q5JV73 1810 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 KTN1Q86UP2 1357 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 SERTM1A2A2V5 107 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 OPLAHO14841 1288 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 CTSHP09668 335 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 HOXA10P31260 410 aaPredicted RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 RABGGTBP53611 331 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 FAM50AQ14320 339 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 RRP1BQ14684 758 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 C8orf34Q49A92 452 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 ZNF394Q53GI3 561 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 N4BP2L1Q5TBK1 243 aaPredicted RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 RASIP1Q5U651 963 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 CCDC174Q6PII3 467 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 PI16Q6UXB8 463 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 SLC39A5Q6ZMH5 540 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 TTLL10Q6ZVT0 673 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 DPH6Q7L8W6 267 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 LSRQ86X29 649 aaPredicted RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 PPARGC1BQ86YN6 1023 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 APOBEC3FQ8IUX4 373 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 DZIP1LQ8IYY4 767 aaKnown RBP4.44□□□□□ -1.7
CPNE3-204ENST00000517862 GPR152Q8TDT2 470 aa4.44□□□□□ -1.7
CPNE3-204ENST00000517862 TNFRSF25Q93038 417 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms